Motif IL_07342.1 Version IL_07342.1 of this group appears in releases 3.28 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_096 | 4WF9 | 0.7029 | 2 | X | LSU rRNA | C | 2539 | A | 2540 | * | U | 2598 | G | 2601 | cWW | cWW | |
| 2 | IL_397D_001 | 397D | 0.4515 | 3 | Multiple bulged bases | B+A | RNA (12-mer) | C | 39 | U | 40 | * | A | 22 | G | 26 | cWW | cWW |
| 3 | IL_5TBW_089 | 5TBW | 0.1647 | 2 | Bulged stacked bases | 1 | LSU rRNA | G | 2276 | C | 2277 | * | G | 2307 | U | 2310 | cWW | cWW |
| 4 | IL_4V9F_070 | 4V9F | 0.2189 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 1974 | C | 1975 | * | G | 2005 | U | 2008 | cWW | cWW |
| 5 | IL_5J7L_318 | 5J7L | 0.0000 | 2 | Bulged stacked bases | DA | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 6 | IL_4Y4O_249 | 4Y4O | 0.0767 | 2 | Bulged stacked bases (H) | 2A | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 7 | IL_4IOA_071 | 4IOA | 0.1011 | 2 | X | LSU rRNA | G | 1916 | C | 1917 | * | G | 1947 | C | 1950 | cWW | cWW | |
| 8 | IL_4WF9_076 | 4WF9 | 0.1618 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1960 | C | 1961 | * | G | 1991 | C | 1994 | cWW | cWW |
| 9 | IL_1MJI_003 | 1MJI | 0.4780 | 2 | Multiple bulged bases | D | 5S rRNA fragment | C | 30 | C | 31 | * | G | 51 | G | 54 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GCAC | 4 |
| GC*GCAU | 2 |
| CA*UACG | 1 |
| CU*AUCUG | 1 |
| CC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CA | 6 |
| *AC | 1 |
| *UCU | 1 |
| *AA | 1 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Bulged stacked bases (4)
- Multiple bulged bases (2)
- (2)
- Bulged stacked bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.37 | Max 0.96
Coloring options: