RNA 3D Hub //

Motif IL_07342.2 Version IL_07342.2 of this group appears in releases 3.48 to 3.53

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_1MJI_0031MJI0.47802Multiple bulged basesD5S rRNA fragmentC30C31*G51G54cWWcWW
2 IL_4V9F_0704V9F0.21892Bulged stacked bases0 LSU rRNAG1974C1975*G2005U2008cWWcWW
3 IL_5TBW_0895TBW0.16472Bulged stacked bases1 LSU rRNAG2276C2277*G2307U2310cWWcWW
4 IL_5J7L_3185J7L0.00002Bulged stacked basesDA LSU rRNAG1933C1934*G1964C1967cWWcWW
5 IL_4Y4O_2494Y4O0.07672Bulged stacked bases (H)2A LSU rRNAG1933C1934*G1964C1967cWWcWW
6 IL_4WF9_0764WF90.16182Bulged stacked basesX LSU rRNAG1960C1961*G1991C1994cWWcWW
7 IL_7A0S_0717A0S0.20362Bulged stacked basesX LSU rRNAG1916C1917*G1947C1950cWWcWW
8 IL_397D_001397D0.45153Multiple bulged basesB+ARNA (12-mer)C39U40*A22G26cWWcWW
9 IL_4WF9_0964WF90.70292X LSU rRNAC2539A2540*U2598G2601cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GC*GCAC4
GC*GCAU2
CC*GAAG1
CU*AUCUG1
CA*UACG1
Non-Watson-Crick part of the motif
SequenceCounts
*CA6
*AA1
*UCU1
*AC1

Release history

Release3.483.493.503.513.523.53
Date2021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Bulged stacked bases (5)
  • Multiple bulged bases (2)
  • (1)
  • Bulged stacked bases (H) (1)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.37 | Max 0.96
    Help

    Coloring options:

    IL_1MJI_003:IL_1MJI_003 = 0IL_1MJI_003:IL_4V9F_070 = 0.6236IL_1MJI_003:IL_5TBW_089 = 0.5952IL_1MJI_003:IL_5J7L_318 = 0.478IL_1MJI_003:IL_4Y4O_249 = 0.4447IL_1MJI_003:IL_4WF9_076 = 0.4717IL_1MJI_003:IL_7A0S_071 = 0.4868IL_1MJI_003:IL_397D_001 = 0.6732IL_1MJI_003:IL_4WF9_096 = 0.9564IL_4V9F_070:IL_1MJI_003 = 0.6236IL_4V9F_070:IL_4V9F_070 = 0IL_4V9F_070:IL_5TBW_089 = 0.1094IL_4V9F_070:IL_5J7L_318 = 0.2189IL_4V9F_070:IL_4Y4O_249 = 0.2372IL_4V9F_070:IL_4WF9_076 = 0.279IL_4V9F_070:IL_7A0S_071 = 0.3162IL_4V9F_070:IL_397D_001 = 0.5271IL_4V9F_070:IL_4WF9_096 = 0.7995IL_5TBW_089:IL_1MJI_003 = 0.5952IL_5TBW_089:IL_4V9F_070 = 0.1094IL_5TBW_089:IL_5TBW_089 = 0IL_5TBW_089:IL_5J7L_318 = 0.1647IL_5TBW_089:IL_4Y4O_249 = 0.1999IL_5TBW_089:IL_4WF9_076 = 0.2403IL_5TBW_089:IL_7A0S_071 = 0.2575IL_5TBW_089:IL_397D_001 = 0.4663IL_5TBW_089:IL_4WF9_096 = 0.7271IL_5J7L_318:IL_1MJI_003 = 0.478IL_5J7L_318:IL_4V9F_070 = 0.2189IL_5J7L_318:IL_5TBW_089 = 0.1647IL_5J7L_318:IL_5J7L_318 = 0IL_5J7L_318:IL_4Y4O_249 = 0.0767IL_5J7L_318:IL_4WF9_076 = 0.1618IL_5J7L_318:IL_7A0S_071 = 0.2036IL_5J7L_318:IL_397D_001 = 0.4515IL_5J7L_318:IL_4WF9_096 = 0.7029IL_4Y4O_249:IL_1MJI_003 = 0.4447IL_4Y4O_249:IL_4V9F_070 = 0.2372IL_4Y4O_249:IL_5TBW_089 = 0.1999IL_4Y4O_249:IL_5J7L_318 = 0.0767IL_4Y4O_249:IL_4Y4O_249 = 0IL_4Y4O_249:IL_4WF9_076 = 0.157IL_4Y4O_249:IL_7A0S_071 = 0.219IL_4Y4O_249:IL_397D_001 = 0.4557IL_4Y4O_249:IL_4WF9_096 = 0.7244IL_4WF9_076:IL_1MJI_003 = 0.4717IL_4WF9_076:IL_4V9F_070 = 0.279IL_4WF9_076:IL_5TBW_089 = 0.2403IL_4WF9_076:IL_5J7L_318 = 0.1618IL_4WF9_076:IL_4Y4O_249 = 0.157IL_4WF9_076:IL_4WF9_076 = 0IL_4WF9_076:IL_7A0S_071 = 0.165IL_4WF9_076:IL_397D_001 = 0.4126IL_4WF9_076:IL_4WF9_096 = 0.7169IL_7A0S_071:IL_1MJI_003 = 0.4868IL_7A0S_071:IL_4V9F_070 = 0.3162IL_7A0S_071:IL_5TBW_089 = 0.2575IL_7A0S_071:IL_5J7L_318 = 0.2036IL_7A0S_071:IL_4Y4O_249 = 0.219IL_7A0S_071:IL_4WF9_076 = 0.165IL_7A0S_071:IL_7A0S_071 = 0IL_7A0S_071:IL_397D_001 = 0.3113IL_7A0S_071:IL_4WF9_096 = 0.6434IL_397D_001:IL_1MJI_003 = 0.6732IL_397D_001:IL_4V9F_070 = 0.5271IL_397D_001:IL_5TBW_089 = 0.4663IL_397D_001:IL_5J7L_318 = 0.4515IL_397D_001:IL_4Y4O_249 = 0.4557IL_397D_001:IL_4WF9_076 = 0.4126IL_397D_001:IL_7A0S_071 = 0.3113IL_397D_001:IL_397D_001 = 0IL_397D_001:IL_4WF9_096 = 0.5065IL_4WF9_096:IL_1MJI_003 = 0.9564IL_4WF9_096:IL_4V9F_070 = 0.7995IL_4WF9_096:IL_5TBW_089 = 0.7271IL_4WF9_096:IL_5J7L_318 = 0.7029IL_4WF9_096:IL_4Y4O_249 = 0.7244IL_4WF9_096:IL_4WF9_076 = 0.7169IL_4WF9_096:IL_7A0S_071 = 0.6434IL_4WF9_096:IL_397D_001 = 0.5065IL_4WF9_096:IL_4WF9_096 = 0IL_1MJI_003IL_4V9F_070IL_5TBW_089IL_5J7L_318IL_4Y4O_249IL_4WF9_076IL_7A0S_071IL_397D_001IL_4WF9_096Discrepancy0.000.200.400.600.80
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