Motif IL_07342.2 Version IL_07342.2 of this group appears in releases 3.48 to 3.53

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4	1-4	2-3
1	IL_1MJI_003	1MJI	0.4780	2	Multiple bulged bases	D	5S rRNA fragment	C	30	C	31	*	G	51	G	54	cWW	cWW
2	IL_4V9F_070	4V9F	0.2189	2	Bulged stacked bases	0	LSU rRNA	G	1974	C	1975	*	G	2005	U	2008	cWW	cWW
3	IL_5TBW_089	5TBW	0.1647	2	Bulged stacked bases	1	LSU rRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
4	IL_5J7L_318	5J7L	0.0000	2	Bulged stacked bases	DA	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
5	IL_4Y4O_249	4Y4O	0.0767	2	Bulged stacked bases (H)	2A	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
6	IL_4WF9_076	4WF9	0.1618	2	Bulged stacked bases	X	LSU rRNA	G	1960	C	1961	*	G	1991	C	1994	cWW	cWW
7	IL_7A0S_071	7A0S	0.2036	2	Bulged stacked bases	X	LSU rRNA	G	1916	C	1917	*	G	1947	C	1950	cWW	cWW
8	IL_397D_001	397D	0.4515	3	Multiple bulged bases	B+A	RNA (12-mer)	C	39	U	40	*	A	22	G	26	cWW	cWW
9	IL_4WF9_096	4WF9	0.7029	2	Multiple bulged bases (H)	X	LSU rRNA	C	2539	A	2540	*	U	2598	G	2601	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GC*GCAC	4
GC*GCAU	2
CC*GAAG	1
CU*AUCUG	1
CA*UACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*CA	6
*AA	1
*UCU	1
*AC	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Bulged stacked bases (5)
Multiple bulged bases (2)
Multiple bulged bases (H) (1)
Bulged stacked bases (H) (1)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.08 | Avg 0.37 | Max 0.96

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Page generated in 0.7684 s