Motif IL_08376.1 Version IL_08376.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_016 | 5J7L | 0.2116 | 0 | C-loop | AA | SSU rRNA | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW | ||||
| 2 | IL_4LFB_013 | 4LFB | 0.0000 | 0 | C-loop | A | SSU rRNA | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW | ||||
| 3 | IL_5J7L_291 | 5J7L | 0.7218 | 1 | C-loop | DA | LSU rRNA | C | 1319 | C | 1320 | A | 1321 | A | 1322 | C | 1323 | * | G | 1331 | G | 1333 | cWW | ncSH | tWH | cWS | cWW | |
| 4 | IL_5J7L_018 | 5J7L | 0.8467 | 0 | C-loop | AA | SSU rRNA | A | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | U | 390 | cSH | cWW | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGACC*GG | 1 |
| UGGCC*GG | 1 |
| CCAAC*GGG | 1 |
| ACAAU*AU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAC* | 1 |
| GGC* | 1 |
| CAA*G | 1 |
| CAA* | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-loop (4)
- Basepair signature
- cWW-tWH-tSW-L-cWS-cWW
- Heat map statistics
- Min 0.21 | Avg 0.49 | Max 0.94
Coloring options: