Motif IL_08376.2 Version IL_08376.2 of this group appears in releases 3.18 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7	1-3	1-7	2-4	2-6	4-7	5-6
1	IL_5J7L_016	5J7L	0.2116	0	C-loop	AA	SSU rRNA	U	304	G	305	A	306	C	307	C	308	*	G	292	G	293		cWW				cWW
2	IL_6CZR_125	6CZR	0.1803	0	C-loop	1a	SSU rRNA	U	300	G	301	G	302	C	303	C	304	*	G	288	G	289		cWW				cWW
3	IL_4LFB_013	4LFB	0.0000	0	C-loop	A	SSU rRNA	U	304	G	305	G	306	C	307	C	308	*	G	292	G	293		cWW				cWW
4	IL_5J7L_291	5J7L	0.7218	1	C-loop	DA	LSU rRNA	C	1319	C	1320	A	1321	A	1322	C	1323	*	G	1331	G	1333		cWW	ncSH	tWH	cWS	cWW
5	IL_5J7L_018	5J7L	0.8467	0	C-loop	AA	SSU rRNA	A	371	C	372	A	373	A	374	U	375	*	A	389	U	390	cSH	cWW		tWH	cWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGGCC*GG	2
UGACC*GG	1
CCAAC*GGG	1
ACAAU*AU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGC*	2
GAC*	1
CAA*G	1
CAA*	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: C-loop (5)
Basepair signature: cWW-tWH-tSW-L-cWW
Heat map statistics: Min 0.18 | Avg 0.48 | Max 0.94

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Coloring options: Nucleotide numbers

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