Motif IL_08966.1 Version IL_08966.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_395 | 4V88 | 0.2585 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 2 | IL_4J39_001 | 4J39 | 0.0000 | 0 | Isolated non-canonical cWW pair | B | RNA (19-mer) | G | 9 | C | 10 | C | 11 | * | G | 9||||4_555 | C | 10||||4_555 | C | 11||||4_555 | cWW | cWW | |
| 3 | IL_4ERD_003 | 4ERD | 0.8893 | 2 | C+D | RNA (22-mer) | G | 146 | G | 147 | A | 148 | * | U | 119 | C | 120 | C | 123 | cWW | ntSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGU*AGA | 1 |
| GCC*GCC | 1 |
| GGA*UCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 1 |
| C*C | 1 |
| G*CGA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Isolated non-canonical cWW pair (1)
- Isolated non-canonical cWW contact (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.26 | Avg 0.46 | Max 0.94
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