Motif IL_08966.2 Version IL_08966.2 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | 3-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1SI2_002 | 1SI2 | 0.2582 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 2 | IL_4V88_395 | 4V88 | 0.0000 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | A | 162 | G | 163 | A | 164 | * | U | 150 | G | 151 | U | 152 | cWW | cWW | |
| 3 | IL_4ERD_003 | 4ERD | 0.9380 | 2 | D+C | RNA (22-mer) | U | 119 | C | 120 | C | 123 | * | G | 146 | G | 147 | A | 148 | cWW | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGA*UGA | 1 |
| AGA*UGU | 1 |
| UCGAC*GGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 2 |
| CGA*G | 1 |
- Annotations
-
- Isolated non-canonical cWW contact (2)
- (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.26 | Avg 0.48 | Max 0.98
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