Motif IL_09092.1 Version IL_09092.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | 2-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ERD_001 | 4ERD | 0.6341 | 2 | C+D | RNA (22-mer) | C | 120 | C | 123 | * | G | 146 | G | 147 | cWW | cWW | ntsS | |
| 2 | IL_8GLP_035 | 8GLP | 0.2597 | 2 | L5 | LSU rRNA | A | 723 | C | 724 | * | G | 942 | U | 945 | cWW | cWW | ||
| 3 | IL_1R3E_001 | 1R3E | 0.2514 | 3 | Multiple bulged bases | D+E | RNA (17-mer) | G | 408 | G | 412 | * | C | 415 | C | 416 | cWW | cWW | |
| 4 | IL_1R3E_002 | 1R3E | 0.1994 | 3 | Multiple bulged bases | E+D | RNA (17-mer) | G | 408 | G | 412 | * | C | 415 | C | 416 | cWW | cWW | |
| 5 | IL_7Q80_003 | 7Q80 | 0.1416 | 2 | Multiple bulged bases | E+F | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
| 6 | IL_7Q80_001 | 7Q80 | 0.1029 | 2 | Multiple bulged bases | B+C | RNA 2 + RNA 3 | C | 13 | G | 14 | * | C | 35 | G | 38 | cWW | cWW | |
| 7 | IL_8ZAU_001 | 8ZAU | 0.0000 | 2 | A | RNA (69-MER) | C | 11 | G | 12 | * | C | 38 | G | 41 | cWW | cWW | ||
| 8 | IL_9PN5_132 | 9PN5 | 0.2021 | 2 | A1 | LSU rRNA | C | 3349 | C | 3350 | * | G | 3353 | G | 3356 | cWW | cWW | ||
| 9 | IL_8OI5_133 | 8OI5 | 0.2340 | 2 | Multiple bulged bases (H) | 1 | LSU rRNA | C | 3314 | C | 3315 | * | G | 3318 | G | 3321 | cWW | cWW | |
| 10 | IL_7D3J_001 | 7D3J | 0.2571 | 2 | Multiple bulged bases | B | RNA (43-MER) | C | 11 | C | 12 | * | G | 16 | G | 19 | cWW | cWW | |
| 11 | IL_7EU9_001 | 7EU9 | 0.3058 | 2 | Multiple bulged bases | B | RNA (43-MER) | C | 11 | C | 12 | * | G | 16 | G | 19 | cWW | cWW | |
| 12 | IL_3R2D_001 | 3R2D | 0.3927 | 2 | Multiple bulged bases | R+S | RNA (12-mer) | G | 2 | C | 5 | * | G | 10 | C | 11 | cWW | cWW | |
| 13 | IL_6JXM_001 | 6JXM | 0.3760 | 2 | Multiple bulged bases | B | tRNA | G | 53 | U | 56 | * | A | 34 | C | 35 | cWW | cWW | |
| 14 | IL_6LTU_001 | 6LTU | 0.4759 | 2 | Multiple bulged bases | B | RNA (56-mer) | C | 11 | U | 12 | * | A | 16 | G | 19 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GUUG | 4 |
| CG*CUAG | 3 |
| GUUCG*CC | 2 |
| CGAC*GG | 1 |
| AC*GAAU | 1 |
| GCUC*GC | 1 |
| GAUU*AC | 1 |
| CU*AUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UU | 5 |
| *UA | 3 |
| UUC* | 2 |
| GA* | 1 |
| *AA | 1 |
| CU* | 1 |
| AU* | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (9)
- (4)
- Multiple bulged bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.36 | Max 0.76
Coloring options: