Motif IL_09348.2 Version IL_09348.2 of this group appears in releases 0.7 to 0.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_017 | 3U5F | 0.8014 | 0 | 6 | 18S rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | ||
| 2 | IL_4A1B_070 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | G | 1648 | G | 1649 | U | 1650 | A | 1651 | * | U | 1843 | U | 1844 | C | 1846 | cWW | cWw | cWW | |
| 3 | IL_2FQN_002 | 2FQN | 0.2741 | 2 | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUG*UGG | 1 |
| GGUA*UUUC | 1 |
| CGCU*AAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 1 |
| GU*UU | 1 |
| GC*AAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in IL_09348.2 | Only in the parent motif |
|---|---|---|---|
| IL_09348.1 Compare | IL_2FQN_002, IL_4A1B_070 | IL_3U5F_017 | |
| IL_69124.1 Compare | IL_3U5F_017 | IL_2FQN_002, IL_4A1B_070 | IL_3MEI_004, IL_2O3V_003, IL_3UXR_105 |
Children motifs
| Child motif | Common motif instances | Only in IL_09348.2 | Only in the child motif |
|---|---|---|---|
| IL_09348.3 Compare | IL_4A1B_070, IL_3U5F_017 | IL_2FQN_002 | IL_2QBG_108 |
| IL_54965.1 Compare | IL_2FQN_002 | IL_4A1B_070, IL_3U5F_017 | IL_1NUV_002 |
- Annotations
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.42 | Max 0.81
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