Motif IL_09439.2 Version IL_09439.2 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-8 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_064 | 4LFB | 0.8146 | 1 | A | SSU rRNA | C | 1440 | G | 1441 | G | 1442 | A | 1446 | G | 1447 | * | C | 1459 | A | 1460 | G | 1461 | cWW | tSH | cWW | |||
| 2 | IL_5UNE_002 | 5UNE | 0.7595 | 1 | Isolated basepair with bulged bases | B+A | RNA (47-MER) | C | 33 | G | 34 | G | 35 | A | 37 | A | 38 | * | U | 10 | G | 11 | G | 12 | cWW | ntSH | cWW | ||
| 3 | IL_8GLP_260 | 8GLP | 0.0000 | 2 | Minor groove platform with extra cWW (H) | S2 | SSU rRNA | U | 1492 | C | 1493 | G | 1495 | U | 1496 | A | 1498 | * | U | 1333 | G | 1334 | G | 1335 | cWW | ntHS | ncBW | cWW | |
| 4 | IL_9H3G_221 | 9H3G | 0.1312 | 2 | h1 | SSU rRNA | U | 1433 | C | 1434 | G | 1436 | U | 1437 | A | 1439 | * | U | 1277 | G | 1278 | G | 1279 | cWW | tHS | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUGUGA*UGG | 2 |
| CGGGAG*CAG | 1 |
| CGGAAA*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGUG*G | 2 |
| GGGA*A | 1 |
| GGAA*G | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Isolated basepair with bulged bases (1)
- Minor groove platform with extra cWW (H) (1)
- Basepair signature
- cWW-L-R-L-cWW-L
- Heat map statistics
- Min 0.13 | Avg 0.47 | Max 0.84
Coloring options: