Motif IL_09520.2 Version IL_09520.2 of this group appears in releases 1.1 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_017 | 3U5F | 0.8014 | 0 | 6 | 18S rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | |
| 2 | IL_4A1B_070 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | G | 1648 | G | 1649 | U | 1650 | A | 1651 | * | U | 1843 | U | 1844 | C | 1846 | cWW | cWw | cWW |
| 3 | IL_2FQN_002 | 2FQN | 0.2741 | 2 | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUG*UGG | 1 |
| GGUA*UUUC | 1 |
| CGCU*AAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 1 |
| GU*UU | 1 |
| GC*AAA | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_09520.2 | Only in the parent motif |
|---|---|---|---|
| IL_09520.1 Compare | IL_2FQN_002, IL_3U5F_017 | IL_4A1B_070 | |
| IL_09348.4 Compare | IL_4A1B_070 | IL_2FQN_002, IL_3U5F_017 | IL_1NUV_002, IL_2QBG_108 |
Children motifs
| Child motif | Common motif instances | Only in IL_09520.2 | Only in the child motif |
|---|---|---|---|
| IL_09520.3 Compare | IL_2FQN_002, IL_3U5F_017 | IL_4A1B_070 | |
| IL_09348.6 Compare | IL_4A1B_070 | IL_2FQN_002, IL_3U5F_017 | IL_1NUV_002, IL_2QBG_108 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.27 | Avg 0.42 | Max 0.81
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