Motif IL_09520.3 Version IL_09520.3 of this group appears in releases 1.9 to 1.9
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_017 | 3U5F | 0.0000 | 0 | 6 | 18S rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | cWW | |
| 2 | IL_2FQN_002 | 2FQN | 0.8070 | 2 | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUG*UGG | 1 |
| CGCU*AAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AU*G | 1 |
| GC*AAA | 1 |
Release history
| Release | 1.9 |
|---|---|
| Date | 2013-12-07 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_09520.3 | Only in the parent motif |
|---|---|---|---|
| IL_09520.2 Compare | IL_2FQN_002, IL_3U5F_017 | IL_4A1B_070 |
Children motifs
| Child motif | Common motif instances | Only in IL_09520.3 | Only in the child motif |
|---|---|---|---|
| IL_97296.1 Compare | IL_3U5F_017 | IL_2FQN_002 | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 |
| IL_69106.1 Compare | IL_2FQN_002 | IL_3U5F_017 | IL_4A1B_070 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.81 | Avg 0.40 | Max 0.81
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