Motif IL_09348.4 Version IL_09348.4 of this group appears in releases 1.0 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_070 | 4A1B | 0.4945 | 1 | 1 | 26S RRNA | G | 1648 | G | 1649 | U | 1650 | A | 1651 | * | U | 1843 | U | 1844 | C | 1846 | cWW | cWw | cWW |
| 2 | IL_2QBG_108 | 2QBG | 0.0000 | 2 | B | 23S rRNA | G | 2843 | G | 2844 | U | 2845 | G | 2846 | * | C | 2870 | U | 2871 | C | 2874 | cWW | cWw | cWW |
| 3 | IL_1NUV_002 | 1NUV | 0.4417 | 3 | D+C | RNA (11-mer) | G | 43 | G | 44 | A | 45 | G | 46 | * | C | 22 | C | 23 | C | 27 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUA*UUUC | 1 |
| GGUG*CUAAC | 1 |
| GGAG*CCGAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU*UU | 1 |
| GU*UAA | 1 |
| GA*CGAG | 1 |
Release history
| Release | 1.0 |
|---|---|
| Date | 2013-03-04 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_09348.4 | Only in the parent motif |
|---|---|---|---|
| IL_09348.3 Compare | IL_4A1B_070, IL_2QBG_108 | IL_1NUV_002 | IL_3U5F_017 |
| IL_54965.1 Compare | IL_1NUV_002 | IL_4A1B_070, IL_2QBG_108 | IL_2FQN_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_09348.4 | Only in the child motif |
|---|---|---|---|
| IL_09348.5 Compare | IL_1NUV_002, IL_2QBG_108 | IL_4A1B_070 | |
| IL_09520.2 Compare | IL_4A1B_070 | IL_1NUV_002, IL_2QBG_108 | IL_2FQN_002, IL_3U5F_017 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.44 | Avg 0.35 | Max 0.62
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