Motif IL_09979.1 Version IL_09979.1 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	break		11		12		13		14		15		16		17		18	1-18	2-17	3-16	4-5	5-15	6-14	9-12	10-11
1	IL_6UFM_002	6UFM	0.0000	0	10x8 Sarcin-Ricin; G-bulge	B	RNA (98-MER)	U	64	C	65	A	66	G	67	U	68	A	69	G	70	A	71	A	72	C	73	*	G	34	A	35	A	36	G	37	A	38	A	39	C	40	G	41	cWW	tSH	tHH	cSH	tWH	tHS	cWw	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UCAGUAGAAC*GAAGAACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CAGUAGAA*AAGAAC	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	New id, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 10x8 Sarcin-Ricin; G-bulge (1)
Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW
Heat map statistics: Min 0.00 | Avg 0.00 | Max 0.00

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view

reading 1125 atoms

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2 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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1125 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 66 ms

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2 models

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Coloring options: Nucleotide numbers

Motif IL_09979.1 Version IL_09979.1 of this group appears in releases 3.91 to 3.94 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_09979.1 Version IL_09979.1 of this group appears in releases 3.91 to 3.94

Download

Csv

Json