Motif IL_10023.1 Version IL_10023.1 of this group appears in releases 3.80 to 3.83

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_4M6D_013	4M6D	0.5538	0		H	aptamer	C	39	A	40	C	41	*	G	26	A	27	G	28	cWW		cWW
2	IL_4M4O_004	4M4O	0.5318	0		B	RNA (59-MER)	C	39	A	40	C	41	*	G	26	A	27	G	28	cWW		cWW
3	IL_8C3A_463	8C3A	0.3990	3		CM	SSU rRNA	A	1355	G	1358	C	1360	*	G	1336	C	1337	U	1338	ncWW		cWW
4	IL_4V88_455	4V88	0.2457	1	Isolated non-canonical cWW pair	A6	SSU rRNA	C	1339	A	1341	C	1342	*	G	1383	A	1384	G	1385	cWW	ncwW	cWW
5	IL_1XJR_003	1XJR	0.0000	1	Isolated non-canonical cWW pair	A	s2m RNA	G	32	G	34	G	35	*	C	16	A	17	C	18	cWW	cWW	cWW
6	IL_4V88_448	4V88	0.5327	0		A6	SSU rRNA	A	1234	C	1235	A	1236	*	U	1249	U	1250	U	1251	cWW		cWW
7	IL_8C3A_454	8C3A	0.6684	0	Other IL	CM	SSU rRNA	A	1219	C	1220	A	1221	*	U	1234	U	1235	U	1236	cWW		cWW
8	IL_3LOA_003	3LOA	0.4592	1	Decoding loop with one bulged A	B+A	RNA (23-mer)	G	1491	A	1493	G	1494	*	C	1407	A	1408	C	1409	cWW		cWW
9	IL_2ET8_003	2ET8	0.5922	1	Decoding loop related	A+B	RNA (22-mer)	G	15	A	17	G	18	*	C	29	A	30	C	31	cWW		cWW
10	IL_4V88_476	4V88	0.7718	0	Other IL	A6	SSU rRNA	C	1711	A	1712	G	1713	*	U	1688	A	1689	G	1690	ncWW		ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAC*GAG	2
ACA*UUU	2
GAAG*CAC	2
AUAGUC*GCU	1
CUAC*GAG	1
GAGG*CAC	1
CAG*UAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*A	3
C*U	2
AA*A	2
UAGU*C	1
UA*A	1
AG*A	1

Release history

Release	3.80	3.81	3.82	3.83
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24
Status	New id, > 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Isolated non-canonical cWW pair (2)
Other IL (2)
Decoding loop related (1)
Decoding loop with one bulged A (1)
Basepair signature: cWW-L-R-cWW
Heat map statistics: Min 0.14 | Avg 0.50 | Max 0.77

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