Motif IL_10235.1 Version IL_10235.1 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3NDB_001 | 3NDB | 0.0000 | 0 | Self complementary | M | SRP RNA | C | 125 | U | 126 | C | 127 | G | 128 | * | C | 253 | G | 254 | G | 255 | G | 256 | ncWW | cWW | ncSW | cWW |
| 2 | IL_5J7L_353 | 5J7L | 0.9244 | 1 | Multiple bulged bases with non-canonical cWW | DA | LSU rRNA | C | 2870 | U | 2871 | A | 2872 | C | 2874 | * | G | 2843 | G | 2844 | U | 2845 | G | 2846 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCG*CGGG | 1 |
| CUAAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*GG | 1 |
| UAA*GU | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Self complementary (1)
- Multiple bulged bases with non-canonical cWW (1)
- Basepair signature
- cWW-cWW-cSW-cWW
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
Coloring options: