Motif IL_10277.2 Version IL_10277.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-4 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V5O_130 | 4V5O | 0.8803 | 0 | BA | A | 1030 | A | 1031 | U | 1032 | * | G | 1037 | U | 1038 | cWW | ncWW | ncWW | ||
| 2 | IL_2XXA_006 | 2XXA | 0.7825 | 0 | F | G | 68 | A | 69 | U | 70 | * | G | 28 | C | 29 | cWW | ncWW | cWW | ||
| 3 | IL_4GMA_001 | 4GMA | 0.6984 | 0 | Z | A | 7 | G | 8 | C | 9 | * | G | 176 | U | 177 | ncWW | cWW | |||
| 4 | IL_5TBW_070 | 5TBW | 0.7785 | 0 | Single stack bend | 1 | G | 1776 | U | 1777 | G | 1778 | * | C | 1670 | C | 1671 | cWW | cWW | ||
| 5 | IL_4UYK_002 | 4UYK | 0.5764 | 0 | Not an internal loop | R | G | 78 | C | 79 | G | 80 | * | C | 121 | C | 122 | ncwW | cWW | ||
| 6 | IL_4Y4O_234 | 4Y4O | 0.5657 | 0 | Single stack bend (H) | 2A | G | 1448 | A | 1449 | G | 1450 | * | C | 1462 | C | 1463 | cWW | cWW | ||
| 7 | IL_4LFB_053 | 4LFB | 0.5103 | 0 | Not an internal loop | A | G | 1274 | A | 1275 | G | 1276 | * | C | 1259 | C | 1260 | ncWW | ntHS | cWW | |
| 8 | IL_3Q1Q_003 | 3Q1Q | 0.3466 | 2 | B | G | 103 | A | 106 | G | 107 | * | C | 209 | C | 210 | cWW | cWS | cWW | ||
| 9 | IL_5TBW_374 | 5TBW | 0.4554 | 1 | Minor groove platform | AS | G | 49 | A | 51 | G | 52 | * | C | 28 | C | 29 | cWW | cWS | cWW | |
| 10 | IL_4TS2_002 | 4TS2 | 0.3578 | 3 | Minor groove platform | Y+X | U | 82 | A | 84 | C | 85 | * | G | 14 | A | 17 | cWW | cWS | cWW | |
| 11 | IL_4IOA_106 | 4IOA | 0.0000 | 1 | Y | G | 53 | C | 55 | G | 56 | * | C | 32 | C | 33 | cWW | ntHS | cWW | ||
| 12 | IL_4V9F_066 | 4V9F | 0.3415 | 1 | Minor groove platform, major groove intercalation | 0 | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | ||
| 13 | IL_5TBW_084 | 5TBW | 0.3544 | 1 | Major groove intercalation | 1 | C | 2196 | A | 2198 | G | 2199 | * | C | 2245 | G | 2246 | cWW | cWW | ||
| 14 | IL_4V8P_244 | 4V8P | 0.3804 | 1 | Major groove intercalation (H) | D1 | C | 2191 | A | 2193 | G | 2194 | * | C | 2240 | G | 2241 | cWW | cWW | ||
| 15 | IL_4IOA_066 | 4IOA | 0.4037 | 1 | Minor groove platform, major groove intercalation (H) | X | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAG*CG | 3 |
| GAG*CC | 2 |
| AAU*GU | 1 |
| GAU*GC | 1 |
| AGC*GU | 1 |
| GUG*CC | 1 |
| GCG*CC | 1 |
| GACAG*CC | 1 |
| GUAG*CC | 1 |
| UAAC*GAAA | 1 |
| GUCG*CC | 1 |
| CCGG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 4 |
| CA* | 3 |
| G* | 1 |
| U* | 1 |
| C* | 1 |
| ACA* | 1 |
| UA* | 1 |
| AA*AA | 1 |
| UC* | 1 |
| CG* | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Not an internal loop (2)
- Minor groove platform (2)
- Minor groove platform, major groove intercalation (H) (1)
- Major groove intercalation (H) (1)
- Minor groove platform, major groove intercalation (1)
- Single stack bend (H) (1)
- Single stack bend (1)
- Major groove intercalation (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.57 | Max 1.00
Coloring options: