Motif IL_10543.1 Version IL_10543.1 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_395 | 4V88 | 0.0000 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW |
| 2 | IL_4J39_001 | 4J39 | 0.2585 | 0 | Isolated non-canonical cWW pair | B | RNA (19-mer) | G | 9 | C | 10 | C | 11 | * | G | 9||||4_555 | C | 10||||4_555 | C | 11||||4_555 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGU*AGA | 1 |
| GCC*GCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 1 |
| C*C | 1 |
- Annotations
-
- Isolated non-canonical cWW pair (1)
- Isolated non-canonical cWW contact (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.26 | Avg 0.13 | Max 0.26
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