Motif IL_11178.1 Version IL_11178.1 of this group appears in releases 3.80 to 3.83
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_003 | 5J7L | 0.1625 | 3 | AA | SSU rRNA | C | 47 | U | 49 | C | 52 | * | G | 359 | G | 360 | G | 361 | cWW | cWW |
| 2 | IL_4LFB_003 | 4LFB | 0.0000 | 3 | A | SSU rRNA | C | 47 | U | 49 | G | 52 | * | U | 359 | A | 360 | G | 361 | cWW | cWW |
| 3 | IL_6CZR_115 | 6CZR | 0.1499 | 3 | 1a | SSU rRNA | C | 48 | U | 50 | G | 53 | * | U | 355 | A | 356 | G | 357 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUAAG*UAG | 2 |
| CCUAAC*GGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAA*A | 2 |
| CUAA*G | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.12 | Max 0.22
Coloring options: