Motif IL_11777.1 Version IL_11777.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-12 | 3-11 | 5-6 | 7-11 | 8-13 | 9-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KZD_005 | 4KZD | 0.0000 | 2 | Part of G-quadruplex | R | RNA (84-MER) | C | 25 | G | 26 | G | 27 | G | 28 | U | 29 | * | A | 53 | G | 54 | U | 55 | G | 57 | A | 58 | G | 59 | G | 61 | U | 62 | G | 63 | cWW | cWH | cWH | cWW | cHW | cHW | |
| 2 | IL_4TS0_006 | 4TS0 | 0.1121 | 2 | X+Y | Spinach RNA aptamer, bimolecular construct | C | 28 | G | 29 | G | 30 | G | 31 | U | 32 | * | A | 64 | G | 65 | U | 66 | G | 68 | A | 69 | G | 70 | G | 72 | U | 73 | G | 74 | cWW | cWH | cWH | cWW | cHW | ntSW | cHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGGU*AGUAGAGUGUG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGG*GUAGAGUGU | 2 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Part of G-quadruplex (1)
- (1)
- Basepair signature
- cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.06 | Max 0.11
Coloring options: