Motif IL_13069.6 Version IL_13069.6 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4QCN_023 | 4QCN | 0.1178 | 4 | A | LSU rRNA | G | 822 | A | 824 | * | U | 834 | C | 838 | cWW | cWW | |
| 2 | IL_1S72_031 | 1S72 | 0.1054 | 4 | Multiple bulged bases (H) | 0 | LSU rRNA | G | 868 | G | 870 | * | C | 880 | C | 884 | cWW | cWW |
| 3 | IL_2QBG_026 | 2QBG | 0.0000 | 4 | B | LSU rRNA | G | 775 | G | 777 | * | C | 787 | C | 791 | cWW | cWW | |
| 4 | IL_4IOA_020 | 4IOA | 0.1096 | 4 | Multiple bulged bases (H) | X | LSU rRNA | G | 788 | A | 790 | * | U | 800 | C | 804 | cWW | cWW |
| 5 | IL_4CUV_038 | 4CUV | 0.1618 | 4 | 1 | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW | |
| 6 | IL_3U5H_035 | 3U5H | 0.1712 | 4 | 5 | LSU rRNA | G | 907 | G | 909 | * | U | 919 | C | 923 | cWW | cWW | |
| 7 | IL_4A1B_040 | 4A1B | 0.1860 | 4 | 1 | LSU rRNA | G | 932 | G | 934 | * | U | 944 | C | 948 | cWW | cWW | |
| 8 | IL_1VX6_041 | 1VX6 | 0.1823 | 4 | A | LSU rRNA | G | 1026 | G | 1028 | * | U | 1038 | C | 1042 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGG*UAAUC | 4 |
| GGA*UAACC | 2 |
| GGG*CCAUC | 1 |
| GGG*CAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AAU | 5 |
| G*AAC | 2 |
| G*CAU | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_13069.6 | Only in the parent motif |
|---|---|---|---|
| IL_13069.5 Compare | IL_2QBG_026, IL_1S72_031, IL_4CUV_038, IL_3U5H_035, IL_4A1B_040, IL_4IOA_020 | IL_4QCN_023, IL_1VX6_041 | IL_4NVV_025 |
Children motifs
| Child motif | Common motif instances | Only in IL_13069.6 | Only in the child motif |
|---|---|---|---|
| IL_13069.7 Compare | IL_2QBG_026, IL_1S72_031, IL_4CUV_038, IL_3U5H_035, IL_4A1B_040, IL_4IOA_020, IL_4QCN_023, IL_1VX6_041 | IL_4W21_061 |
- Annotations
-
- (6)
- Multiple bulged bases (H) (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.14 | Max 0.25
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