Motif IL_14266.1 Version IL_14266.1 of this group appears in releases 3.28 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4YAZ_007 | 4YAZ | 1.0726 | 1 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | C | 68 | G | 69 | * | U | 47 | A | 48 | G | 50 | cWW | cWW |
| 2 | IL_6JQ5_004 | 6JQ5 | 0.7504 | 0 | B | RNA (82-MER) | G | 31 | G | 32 | * | U | 62 | G | 63||A | C | 64 | cWW | cWW | |
| 3 | IL_4Y4O_276 | 4Y4O | 0.5201 | 0 | 2A | LSU rRNA | C | 2591 | G | 2592 | * | C | 2601 | A | 2602 | G | 2603 | cWW | cWW | |
| 4 | IL_5CNR_002 | 5CNR | 0.0000 | 0 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | A | 39 | G | 40 | cWW | cWW |
| 5 | IL_4P97_002 | 4P97 | 0.0932 | 0 | Single bulged A | A+B | RNA (16-mer) + RNA (11-mer) | C | 12 | C | 13 | * | G | 38 | A | 39 | G | 40 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CC*GAG | 2 |
| CG*UAAG | 1 |
| GG*UGC | 1 |
| CG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 3 |
| *AA | 1 |
| *G | 1 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged A (2)
- (2)
- Multiple bulged bases (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.09 | Avg 0.58 | Max 1.12
Coloring options: