#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 51-52-53-4
1 IL_4Y4O_2444Y4O0.00001Minor groove platform, major groove intercalation (H)2A LSU rRNAC1837G1839G1840*C1902G1903cWWcWW
2 IL_3RW6_0033RW60.83191Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAU38A40U41*A20G21cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CCGG*CG1
UAAU*AG1
Non-Watson-Crick part of the motif
SequenceCounts
CG*1
AA*1

Release history

Release3.33.43.53.63.73.83.93.103.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-19
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Minor groove platform (1)
  • Minor groove platform, major groove intercalation (H) (1)
  • Basepair signature
    cWW-tHS-cWW
    Heat map statistics
    Min 0.83 | Avg 0.42 | Max 0.83
    Help

    Coloring options:

    IL_4Y4O_244:IL_4Y4O_244 = 0IL_4Y4O_244:IL_3RW6_003 = 0.8319IL_3RW6_003:IL_4Y4O_244 = 0.8319IL_3RW6_003:IL_3RW6_003 = 0IL_4Y4O_244IL_3RW6_003Discrepancy0.000.200.400.600.80
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