Motif IL_15409.1 Version IL_15409.1 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4Y4O_244 | 4Y4O | 0.0000 | 1 | Minor groove platform, major groove intercalation (H) | 2A | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | cWW | |
| 2 | IL_3RW6_003 | 3RW6 | 0.8319 | 1 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | U | 38 | A | 40 | U | 41 | * | A | 20 | G | 21 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGG*CG | 1 |
| UAAU*AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG* | 1 |
| AA* | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform (1)
- Minor groove platform, major groove intercalation (H) (1)
- Basepair signature
- cWW-tHS-cWW
- Heat map statistics
- Min 0.83 | Avg 0.42 | Max 0.83
Coloring options: