Motif IL_15421.3 Version IL_15421.3 of this group appears in releases 3.27 to 3.36
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 2-7 | 3-4 | 3-6 | 5-7 | 6-7 | 6-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_012 | 4WF9 | 0.9343 | 0 | Major groove minor groove platform with extra cWW | X | LSU rRNA | G | 304 | A | 305 | C | 306 | * | G | 409 | G | 410 | A | 411 | U | 412 | C | 413 | cWW | cWW | ncSW | |||||
| 2 | IL_5J7L_021 | 5J7L | 0.6984 | 1 | AA | SSU rRNA | C | 440 | A | 441 | G | 442 | * | C | 492 | A | 493 | G | 494 | A | 496 | G | 497 | cWW | cWW | cWW | cSH | |||||
| 3 | IL_4PDB_001 | 4PDB | 0.6094 | 0 | Other IL | I | SELEX RNA aptamer | C | 28 | A | 29 | G | 30 | * | C | 9 | A | 10 | G | 11 | U | 12 | G | 13 | cWW | cWW | cWW | cSH | ||||
| 4 | IL_5CZZ_001 | 5CZZ | 0.3404 | 0 | B | RNA (73-MER) | A | 29 | C | 30 | U | 31 | * | A | 42 | A | 43 | U | 44 | C | 45 | U | 46 | cWW | cWW | cWW | ||||||
| 5 | IL_6DME_002 | 6DME | 0.0000 | 0 | 8-nt loop receptor | A | ppGpp Riboswitch | G | 37 | A | 38 | C | 39 | * | G | 15 | G | 16 | A | 17 | U | 18 | C | 19 | cWW | cWW | ntSH | cWW | ncSH | ncSH | ntSW | |
| 6 | IL_4WF9_114 | 4WF9 | 0.3519 | 0 | Y | 5S rRNA | C | 28 | C | 29 | U | 30 | * | A | 48 | G | 49 | A | 50 | A | 51 | G | 52 | cWW | ncWW | cSW | cWW | cSH | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAC*GGAUC | 2 |
| CAG*CAGAAG | 1 |
| CAG*CAGUG | 1 |
| ACU*AAUCU | 1 |
| CCU*AGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAU | 2 |
| A*AGAA | 1 |
| A*AGU | 1 |
| C*AUC | 1 |
| C*GAA | 1 |
Release history
| Release | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Other IL (1)
- Major groove minor groove platform with extra cWW (1)
- 8-nt loop receptor (1)
- Basepair signature
- cWW-cSH-R-cWW-cWW
- Heat map statistics
- Min 0.24 | Avg 0.56 | Max 0.96
Coloring options: