Motif IL_16188.1 Version IL_16188.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_189 | 4V8P | 0.7578 | 0 | D1 | LSU rRNA | A | 779 | C | 780 | * | G | 800 | U | 801 | U | 802 | cWW | cWW | |
| 2 | IL_4WF9_098 | 4WF9 | 0.4796 | 0 | Single bulged A | X | LSU rRNA | C | 2618 | G | 2619 | * | C | 2628 | A | 2629 | G | 2630 | cWW | cWW |
| 3 | IL_4WZJ_019 | 4WZJ | 0.0000 | 0 | XXX | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | C | 3 | G | 4 | * | U | 25 | U | 26 | G | 27 | cWW | cWW | |
| 4 | IL_4IOA_094 | 4IOA | 0.5375 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2570 | G | 2571 | * | C | 2580 | A | 2581 | G | 2582 | cWW | cWW |
| 5 | IL_4IOA_024 | 4IOA | 0.6431 | 0 | Single bulged C (H) | X | LSU rRNA | C | 863 | C | 864 | * | G | 938 | C | 939 | G | 940 | cWW | cWW |
| 6 | IL_1KXK_001 | 1KXK | 0.6423 | 1 | A | ai5g group II Self-splicing intron | G | 61 | G | 62 | * | U | 8 | U | 10 | C | 11 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CAG | 2 |
| AC*GUU | 1 |
| CG*UUG | 1 |
| CC*GCG | 1 |
| GG*UAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 2 |
| *A | 2 |
| *C | 1 |
| *AU | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Single bulged C (H) (1)
- Single bulged A (H) (1)
- Single bulged A (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.48 | Avg 0.56 | Max 0.90
Coloring options: