Motif IL_18776.1 Version IL_18776.1 of this group appears in releases 3.2 to 3.11

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8		9	1-9	2-8	3-6	3-7	4-5	6-7
1	IL_4V88_464	4V88	0.7041	0		A6	SSU rRNA	G	1638	C	1639	C	1640	C	1641	*	G	1760	U	1761	A	1762	A	1763	C	1764	cWW	cWW		cSW	cWW	cSH
2	IL_4V5O_158	4V5O	0.6588	0		BA	SSU rRNA	G	1610	C	1611	C	1612	C	1613	*	G	1713	U	1714	A	1715	A	1716	C	1717	cWW	cWW		cSW	cWW
3	IL_4LFB_008	4LFB	0.0000	0		A	SSU rRNA	G	227	A	228	U	229	G	230	*	C	132	U	133	A	134	C	135	C	136	cWW		cWw		cWW
4	IL_5J7L_010	5J7L	0.1041	0	Minor groove platform related	AA	SSU rRNA	G	227	A	228	U	229	G	230	*	C	132	U	133	G	134	C	135	C	136	cWW		cWw		cWW
5	IL_3CUL_001	3CUL	0.5638	1		C	RNA (92-MER)	C	22	A	23	G	24	G	25	*	U	44	A	45	U	47	G	48	G	49	cWW	cWW		cWB	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCCC*GUAAC	2
GAUG*CUACC	1
GAUG*CUGCC	1
CAGG*UAUUGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CC*UAA	2
AU*UAC	1
AU*UGC	1
AG*AUUG	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.2	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-09-26	2018-10-19
Status	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	New id, no parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Minor groove platform related (1)
Basepair signature: cWW-cWW-cSW-cWW-cWW
Heat map statistics: Min 0.10 | Avg 0.49 | Max 0.97

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