Motif IL_19217.1 Version IL_19217.1 of this group appears in releases 3.19 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_009 | 5J7L | 0.0000 | 0 | Isolated non-canonical cWW pair | AA | SSU rRNA | G | 128 | A | 129 | A | 130 | A | 131 | * | U | 231 | G | 232 | C | 233 | cWW | cWW | cWW | |
| 2 | IL_255D_001 | 255D | 0.9786 | 1 | Tandem non-canonical cWW pairs | A | RNA (12-mer) | U | 5 | U | 6 | C | 7 | G | 8 | * | U | 5||||2_656 | U | 6||||2_656 | G | 8||||2_656 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAA*UGC | 1 |
| UUCG*UUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*G | 1 |
| UC*UC | 1 |
Release history
| Release | 3.19 |
|---|---|
| Date | 2019-05-31 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (1)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
Coloring options: