Motif IL_19897.4 Version IL_19897.4 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 1-11 | 4-8 | 5-8 | 9-10 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4M6D_012 | 4M6D | 0.9130 | 0 | H | aptamer | U | 15 | A | 16 | A | 17 | A | 18 | G | 19 | A | 20 | G | 21 | U | 22 | G | 23 | * | C | 44 | A | 45 | ncWW | tWW | cWW | |
| 2 | IL_7EOG_003 | 7EOG | 0.0000 | 0 | A | Pepper (49-MER) | C | 28 | C | 29 | A | 30 | A | 31 | U | 32 | C | 33 | G | 34 | U | 35 | A | 36 | * | U | 14 | G | 15 | cWW | tWH | cWW | |
| 3 | IL_7SZU_004 | 7SZU | 0.1151 | 0 | R | RNA aptamer | C | 9 | C | 10 | A | 11 | A | 12 | U | 13 | C | 14 | G | 15 | U | 16 | A | 17 | * | U | 59 | G | 60 | cWW | tWH | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAUCGUA*UG | 2 |
| UAAAGAGUG*CA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAUCGU* | 2 |
| AAAGAGU* | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-L-L-tWH-R-L
- Heat map statistics
- Min 0.12 | Avg 0.44 | Max 0.94
Coloring options: