Motif IL_20247.1 Version IL_20247.1 of this group appears in releases 3.28 to 3.36
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_341 | 5J7L | 0.6512 | 2 | DA | LSU rRNA | C | 2512 | A | 2513 | * | U | 2571 | G | 2574 | cWW | cWW | |
| 2 | IL_6JOO_001 | 6JOO | 0.0000 | 3 | B | Guide RNA | G | 57 | C | 58 | * | G | 61 | C | 65 | cWW | cWW | |
| 3 | IL_1NTA_002 | 1NTA | 0.7724 | 5 | Major groove intercalation | B+A | RNA (18-mer) | C | 113 | G | 114 | * | C | 7 | G | 13 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CA*UACG | 1 |
| GC*GUUUC | 1 |
| CG*CAUUUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AC | 1 |
| *UUU | 1 |
| *AUUUG | 1 |
Release history
| Release | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Major groove intercalation (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.65 | Avg 0.53 | Max 0.94
Coloring options: