Motif IL_21270.1 Version IL_21270.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_327 | 5J7L | 0.5377 | 0 | Other IL | DA | LSU rRNA | A | 2183 | A | 2184 | U | 2185 | G | 2186 | * | C | 2103 | C | 2104 | U | 2105 | U | 2106 | ncWW | ntSH | ncWW | cWW |
| 2 | IL_5UNE_005 | 5UNE | 0.5206 | 0 | tSH-tHW | B+A | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ntWH | ncWS | cWW |
| 3 | IL_2OE5_002 | 2OE5 | 0.0434 | 1 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | A | 1493 | G | 1494 | cWW | cWS | cWW | ||
| 4 | IL_2OE8_002 | 2OE8 | 0.0000 | 1 | A+B | RNA (16-mer) + RNA (17-mer) | C | 1407 | G | 1408 | C | 1409 | U | 1410 | * | A | 1490 | A | 1492 | A | 1493 | G | 1494 | cWW | cWS | cWW | ||
| 5 | IL_2O3Y_003 | 2O3Y | 0.1284 | 1 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | A | 18 | G | 19 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCU*AAAAG | 3 |
| AAUG*CCUU | 1 |
| GCAC*GCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*AAA | 3 |
| AU*CU | 1 |
| CA*CA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Other IL (1)
- tSH-tHW (1)
- Basepair signature
- cWW-tSH-cWS-cWW
- Heat map statistics
- Min 0.04 | Avg 0.31 | Max 0.57
Coloring options: