Motif IL_22050.1 Version IL_22050.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-9 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3IGI_010 | 3IGI | 0.0000 | 0 | A | Group IIC intron | G | 267 | A | 268 | G | 269 | G | 270 | U | 271 | * | A | 282 | A | 283 | G | 284 | U | 285 | C | 286 | cWW | tHW | tHS | cWW | cWW | ||
| 2 | IL_5VOE_003 | 5VOE | 0.7874 | 1 | Triple non-canonical cWW pairs | A | Aptamer 11F7t (36-MER) | CFL | 27 | CFL | 28 | CFL | 29 | CFL | 30 | G | 31 | * | CFL | 6 | CFL | 7 | CFL | 8 | CFL | 9 | G | 11 | ncBW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGGU*AAGUC | 1 |
| (CFL)(CFL)(CFL)(CFL)G*(CFL)(CFL)(CFL)(CFL)AG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGG*AGU | 1 |
| (CFL)(CFL)(CFL)*(CFL)(CFL)(CFL)A | 1 |
- Annotations
-
- (1)
- Triple non-canonical cWW pairs (1)
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.79 | Avg 0.39 | Max 0.79
Coloring options: