Motif IL_22448.1 Version IL_22448.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 3-8 | 4-6 | 4-7 | 4-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5AJ3_039 | 5AJ3 | 0.5093 | 2 | A | SSU rRNA | C | 851 | A | 852 | C | 853 | C | 854 | C | 855 | * | G | 915 | A | 916 | C | 917 | G | 920 | cWW | ncWW | cWW | |||||
| 2 | IL_3J9M_102 | 3J9M | 0.4524 | 0 | AA | SSU rRNA | C | 1491 | A | 1492 | C | 1493 | C | 1494 | C | 1495 | * | G | 1554 | A | 1555 | C | 1556 | G | 1559 | cWW | cWW | cWW | |||||
| 3 | IL_1J2B_001 | 1J2B | 0.4974 | 0 | C | tRNA | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | C | 929 | cWW | cWW | ||||||
| 4 | IL_3J79_009 | 3J79 | 0.4187 | 0 | A | LSU rRNA | C | 255 | A | 256 | U | 257 | U | 258 | G | 259 | * | C | 172 | A | 173 | U | 174 | G | 175 | cWW | cWW | ncWw | cWW | ||||
| 5 | IL_3J7P_047 | 3J7P | 0.3646 | 0 | 5 | LSU rRNA | C | 1474 | G | 1475 | C | 1476 | C | 1477 | C | 1478 | * | G | 1487 | G | 1488 | G | 1489 | G | 1490 | cWW | cwW | ncWW | |||||
| 6 | IL_3J7P_023 | 3J7P | 0.3537 | 0 | 5 | LSU rRNA | C | 657 | C | 658 | G | 659 | A | 660 | C | 661 | * | G | 493 | U | 494 | C | 495 | G | 496 | cWW | ncWW | ||||||
| 7 | IL_4V91_010 | 4V91 | 0.0000 | 0 | 1 | LSU rRNA | C | 163 | A | 164 | A | 165 | C | 166 | U | 167 | * | A | 255 | G | 256 | U | 257 | G | 258 | cWW | cWW | cWW | |||||
| 8 | IL_3J7P_039 | 3J7P | 0.4435 | 1 | 5 | LSU rRNA | G | 1212 | G | 1213 | C | 1215 | C | 1216 | G | 1217 | * | C | 1082 | U | 1083 | C | 1084 | C | 1085 | cWW | cWW | ||||||
| 9 | IL_4V91_103 | 4V91 | 0.5218 | 0 | 1 | LSU rRNA | U | 2508 | U | 2509 | A | 2510 | C | 2511 | C | 2512 | * | G | 2435 | U | 2436 | G | 2437 | A | 2438 | cWW | ncWW | ncWW | cWW | ||||
| 10 | IL_3J7P_004 | 3J7P | 0.5231 | 0 | 5 | LSU rRNA | C | 53 | G | 54 | G | 55 | A | 56 | G | 57 | * | C | 26 | C | 27 | C | 28 | G | 29 | cWW | cWW | ||||||
| 11 | IL_3JAM_086 | 3JAM | 0.7317 | 1 | 2 | SSU rRNA | C | 1709 | A | 1710 | G | 1711 | A | 1712 | G | 1713 | * | C | 1684 | U | 1685 | A | 1687 | G | 1688 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACCC*GACAAG | 1 |
| CACCC*GACG | 1 |
| GGAGG*CGCC | 1 |
| CAUUG*CAUG | 1 |
| CGCCC*GGGG | 1 |
| CCGAC*GUCG | 1 |
| CAACU*AGUG | 1 |
| GGCCCG*CUCC | 1 |
| UUACC*GUGA | 1 |
| CGGAG*CCCG | 1 |
| CAGAG*CUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACC*ACAA | 1 |
| ACC*AC | 1 |
| GAG*GC | 1 |
| AUU*AU | 1 |
| GCC*GG | 1 |
| CGA*UC | 1 |
| AAC*GU | 1 |
| GCCC*UC | 1 |
| UAC*UG | 1 |
| GGA*CC | 1 |
| AGA*UUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Basepair signature
- cWW-L-R-R-L-L-cWW
- Heat map statistics
- Min 0.18 | Avg 0.54 | Max 0.86
Coloring options: