RNA 3D Hub //

Motif IL_22448.1 Version IL_22448.1 of this group appears in releases 2.0 to 2.0

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 91-92-83-73-84-64-74-85-6
1 IL_5AJ3_0395AJ30.50932A SSU rRNAC851A852C853C854C855*G915A916C917G920cWWncWWcWW
2 IL_3J9M_1023J9M0.45240AA SSU rRNAC1491A1492C1493C1494C1495*G1554A1555C1556G1559cWWcWWcWW
3 IL_1J2B_0011J2B0.49740CtRNA(Val)G943G944A945G946G947*C926G927C928C929cWWcWW
4 IL_3J79_0093J790.41870A LSU rRNAC255A256U257U258G259*C172A173U174G175cWWcWWncWwcWW
5 IL_3J7P_0473J7P0.364605 LSU rRNAC1474G1475C1476C1477C1478*G1487G1488G1489G1490cWWcwWncWW
6 IL_3J7P_0233J7P0.353705 LSU rRNAC657C658G659A660C661*G493U494C495G496cWWncWW
7 IL_4V91_0104V910.000001 LSU rRNAC163A164A165C166U167*A255G256U257G258cWWcWWcWW
8 IL_3J7P_0393J7P0.443515 LSU rRNAG1212G1213C1215C1216G1217*C1082U1083C1084C1085cWWcWW
9 IL_4V91_1034V910.521801 LSU rRNAU2508U2509A2510C2511C2512*G2435U2436G2437A2438cWWncWWncWWcWW
10 IL_3J7P_0043J7P0.523105 LSU rRNAC53G54G55A56G57*C26C27C28G29cWWcWW
11 IL_3JAM_0863JAM0.731712 SSU rRNAC1709A1710G1711A1712G1713*C1684U1685A1687G1688cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CACCC*GACAAG1
CACCC*GACG1
GGAGG*CGCC1
CAUUG*CAUG1
CGCCC*GGGG1
CCGAC*GUCG1
CAACU*AGUG1
GGCCCG*CUCC1
UUACC*GUGA1
CGGAG*CCCG1
CAGAG*CUUAG1
Non-Watson-Crick part of the motif
SequenceCounts
ACC*ACAA1
ACC*AC1
GAG*GC1
AUU*AU1
GCC*GG1
CGA*UC1
AAC*GU1
GCCC*UC1
UAC*UG1
GGA*CC1
AGA*UUA1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (11)
    • Basepair signature
    cWW-L-R-R-L-L-cWW
    Heat map statistics
    Min 0.18 | Avg 0.54 | Max 0.86
    Help

    Coloring options:

    IL_5AJ3_039:IL_5AJ3_039 = 0IL_5AJ3_039:IL_3J9M_102 = 0.1825IL_5AJ3_039:IL_1J2B_001 = 0.713IL_5AJ3_039:IL_3J79_009 = 0.6093IL_5AJ3_039:IL_3J7P_047 = 0.6286IL_5AJ3_039:IL_3J7P_023 = 0.6272IL_5AJ3_039:IL_4V91_010 = 0.5093IL_5AJ3_039:IL_3J7P_039 = 0.6918IL_5AJ3_039:IL_4V91_103 = 0.7892IL_5AJ3_039:IL_3J7P_004 = 0.7404IL_5AJ3_039:IL_3JAM_086 = 0.7582IL_3J9M_102:IL_5AJ3_039 = 0.1825IL_3J9M_102:IL_3J9M_102 = 0IL_3J9M_102:IL_1J2B_001 = 0.6677IL_3J9M_102:IL_3J79_009 = 0.5632IL_3J9M_102:IL_3J7P_047 = 0.5838IL_3J9M_102:IL_3J7P_023 = 0.5996IL_3J9M_102:IL_4V91_010 = 0.4524IL_3J9M_102:IL_3J7P_039 = 0.6358IL_3J9M_102:IL_4V91_103 = 0.755IL_3J9M_102:IL_3J7P_004 = 0.6578IL_3J9M_102:IL_3JAM_086 = 0.7146IL_1J2B_001:IL_5AJ3_039 = 0.713IL_1J2B_001:IL_3J9M_102 = 0.6677IL_1J2B_001:IL_1J2B_001 = 0IL_1J2B_001:IL_3J79_009 = 0.5586IL_1J2B_001:IL_3J7P_047 = 0.6526IL_1J2B_001:IL_3J7P_023 = 0.6647IL_1J2B_001:IL_4V91_010 = 0.4974IL_1J2B_001:IL_3J7P_039 = 0.6612IL_1J2B_001:IL_4V91_103 = 0.7398IL_1J2B_001:IL_3J7P_004 = 0.7296IL_1J2B_001:IL_3JAM_086 = 0.8584IL_3J79_009:IL_5AJ3_039 = 0.6093IL_3J79_009:IL_3J9M_102 = 0.5632IL_3J79_009:IL_1J2B_001 = 0.5586IL_3J79_009:IL_3J79_009 = 0IL_3J79_009:IL_3J7P_047 = 0.4655IL_3J79_009:IL_3J7P_023 = 0.5159IL_3J79_009:IL_4V91_010 = 0.4187IL_3J79_009:IL_3J7P_039 = 0.5004IL_3J79_009:IL_4V91_103 = 0.6247IL_3J79_009:IL_3J7P_004 = 0.6284IL_3J79_009:IL_3JAM_086 = 0.8448IL_3J7P_047:IL_5AJ3_039 = 0.6286IL_3J7P_047:IL_3J9M_102 = 0.5838IL_3J7P_047:IL_1J2B_001 = 0.6526IL_3J7P_047:IL_3J79_009 = 0.4655IL_3J7P_047:IL_3J7P_047 = 0IL_3J7P_047:IL_3J7P_023 = 0.261IL_3J7P_047:IL_4V91_010 = 0.3646IL_3J7P_047:IL_3J7P_039 = 0.4733IL_3J7P_047:IL_4V91_103 = 0.4554IL_3J7P_047:IL_3J7P_004 = 0.5147IL_3J7P_047:IL_3JAM_086 = 0.7697IL_3J7P_023:IL_5AJ3_039 = 0.6272IL_3J7P_023:IL_3J9M_102 = 0.5996IL_3J7P_023:IL_1J2B_001 = 0.6647IL_3J7P_023:IL_3J79_009 = 0.5159IL_3J7P_023:IL_3J7P_047 = 0.261IL_3J7P_023:IL_3J7P_023 = 0IL_3J7P_023:IL_4V91_010 = 0.3537IL_3J7P_023:IL_3J7P_039 = 0.3996IL_3J7P_023:IL_4V91_103 = 0.4228IL_3J7P_023:IL_3J7P_004 = 0.5416IL_3J7P_023:IL_3JAM_086 = 0.734IL_4V91_010:IL_5AJ3_039 = 0.5093IL_4V91_010:IL_3J9M_102 = 0.4524IL_4V91_010:IL_1J2B_001 = 0.4974IL_4V91_010:IL_3J79_009 = 0.4187IL_4V91_010:IL_3J7P_047 = 0.3646IL_4V91_010:IL_3J7P_023 = 0.3537IL_4V91_010:IL_4V91_010 = 0IL_4V91_010:IL_3J7P_039 = 0.4435IL_4V91_010:IL_4V91_103 = 0.5218IL_4V91_010:IL_3J7P_004 = 0.5231IL_4V91_010:IL_3JAM_086 = 0.7317IL_3J7P_039:IL_5AJ3_039 = 0.6918IL_3J7P_039:IL_3J9M_102 = 0.6358IL_3J7P_039:IL_1J2B_001 = 0.6612IL_3J7P_039:IL_3J79_009 = 0.5004IL_3J7P_039:IL_3J7P_047 = 0.4733IL_3J7P_039:IL_3J7P_023 = 0.3996IL_3J7P_039:IL_4V91_010 = 0.4435IL_3J7P_039:IL_3J7P_039 = 0IL_3J7P_039:IL_4V91_103 = 0.5427IL_3J7P_039:IL_3J7P_004 = 0.6586IL_3J7P_039:IL_3JAM_086 = 0.8415IL_4V91_103:IL_5AJ3_039 = 0.7892IL_4V91_103:IL_3J9M_102 = 0.755IL_4V91_103:IL_1J2B_001 = 0.7398IL_4V91_103:IL_3J79_009 = 0.6247IL_4V91_103:IL_3J7P_047 = 0.4554IL_4V91_103:IL_3J7P_023 = 0.4228IL_4V91_103:IL_4V91_010 = 0.5218IL_4V91_103:IL_3J7P_039 = 0.5427IL_4V91_103:IL_4V91_103 = 0IL_4V91_103:IL_3J7P_004 = 0.565IL_4V91_103:IL_3JAM_086 = 0.8207IL_3J7P_004:IL_5AJ3_039 = 0.7404IL_3J7P_004:IL_3J9M_102 = 0.6578IL_3J7P_004:IL_1J2B_001 = 0.7296IL_3J7P_004:IL_3J79_009 = 0.6284IL_3J7P_004:IL_3J7P_047 = 0.5147IL_3J7P_004:IL_3J7P_023 = 0.5416IL_3J7P_004:IL_4V91_010 = 0.5231IL_3J7P_004:IL_3J7P_039 = 0.6586IL_3J7P_004:IL_4V91_103 = 0.565IL_3J7P_004:IL_3J7P_004 = 0IL_3J7P_004:IL_3JAM_086 = 0.6991IL_3JAM_086:IL_5AJ3_039 = 0.7582IL_3JAM_086:IL_3J9M_102 = 0.7146IL_3JAM_086:IL_1J2B_001 = 0.8584IL_3JAM_086:IL_3J79_009 = 0.8448IL_3JAM_086:IL_3J7P_047 = 0.7697IL_3JAM_086:IL_3J7P_023 = 0.734IL_3JAM_086:IL_4V91_010 = 0.7317IL_3JAM_086:IL_3J7P_039 = 0.8415IL_3JAM_086:IL_4V91_103 = 0.8207IL_3JAM_086:IL_3J7P_004 = 0.6991IL_3JAM_086:IL_3JAM_086 = 0IL_5AJ3_039IL_3J9M_102IL_1J2B_001IL_3J79_009IL_3J7P_047IL_3J7P_023IL_4V91_010IL_3J7P_039IL_4V91_103IL_3J7P_004IL_3JAM_086Discrepancy0.000.200.400.600.80
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