#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4break 5 61-64-5
1 IL_7A0S_0717A0S0.24900Bulged stacked basesX LSU rRNAG1947C1948A1949C1950*G1916C1917cWWcWW
2 IL_4WF9_0764WF90.28840Bulged stacked basesX LSU rRNAG1991C1992A1993C1994*G1960C1961cWWcWW
3 IL_5J7L_3185J7L0.26260Bulged stacked basesDA LSU rRNAG1964C1965A1966C1967*G1933C1934cWWcWW
4 IL_9DFE_0769DFE0.237901A LSU rRNAG1964C1965A1966C1967*G1933C1934cWWcWW
5 IL_4V9F_0704V9F0.18100Bulged stacked bases0 LSU rRNAG2005C2006A2007U2008*G1974C1975cWWcWW
6 IL_8CRE_0948CRE0.000001 LSU rRNAG2285C2286A2287U2288*G2254C2255cWWcWW
7 IL_8P9A_3178P9A0.04300AR LSU rRNAG2307C2308A2309U2310*G2276C2277cWWcWW
8 IL_8CRE_4318CRE0.58440CM SSU rRNAG803U804U805A806*U836C837cWWcWW
9 IL_397D_001397D0.59251Multiple bulged basesA+BRNA (15-mer) + RNA (12-mer)A22U23C24G26*C39U40cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCAC*GC4
GCAU*GC3
GUUA*UC1
AUCUG*CU1
Non-Watson-Crick part of the motif
SequenceCounts
CA*7
UU*1
UCU*1

Release history

Release3.983.99
Date2025-06-182025-07-16
StatusUpdated, 1 parentExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Bulged stacked bases (4)
  • (4)
  • Multiple bulged bases (1)
  • Basepair signature
    cWW-L-cWW-L
    Heat map statistics
    Min 0.04 | Avg 0.35 | Max 0.77
    Help

    Coloring options:

    IL_7A0S_071:IL_7A0S_071 = 0IL_7A0S_071:IL_4WF9_076 = 0.1381IL_7A0S_071:IL_5J7L_318 = 0.1387IL_7A0S_071:IL_9DFE_076 = 0.1537IL_7A0S_071:IL_4V9F_070 = 0.2078IL_7A0S_071:IL_8CRE_094 = 0.249IL_7A0S_071:IL_8P9A_317 = 0.2626IL_7A0S_071:IL_8CRE_431 = 0.7116IL_7A0S_071:IL_397D_001 = 0.7404IL_4WF9_076:IL_7A0S_071 = 0.1381IL_4WF9_076:IL_4WF9_076 = 0IL_4WF9_076:IL_5J7L_318 = 0.1227IL_4WF9_076:IL_9DFE_076 = 0.1598IL_4WF9_076:IL_4V9F_070 = 0.2155IL_4WF9_076:IL_8CRE_094 = 0.2884IL_4WF9_076:IL_8P9A_317 = 0.2909IL_4WF9_076:IL_8CRE_431 = 0.7597IL_4WF9_076:IL_397D_001 = 0.769IL_5J7L_318:IL_7A0S_071 = 0.1387IL_5J7L_318:IL_4WF9_076 = 0.1227IL_5J7L_318:IL_5J7L_318 = 0IL_5J7L_318:IL_9DFE_076 = 0.0703IL_5J7L_318:IL_4V9F_070 = 0.1745IL_5J7L_318:IL_8CRE_094 = 0.2626IL_5J7L_318:IL_8P9A_317 = 0.2694IL_5J7L_318:IL_8CRE_431 = 0.6887IL_5J7L_318:IL_397D_001 = 0.7536IL_9DFE_076:IL_7A0S_071 = 0.1537IL_9DFE_076:IL_4WF9_076 = 0.1598IL_9DFE_076:IL_5J7L_318 = 0.0703IL_9DFE_076:IL_9DFE_076 = 0IL_9DFE_076:IL_4V9F_070 = 0.1719IL_9DFE_076:IL_8CRE_094 = 0.2379IL_9DFE_076:IL_8P9A_317 = 0.2445IL_9DFE_076:IL_8CRE_431 = 0.6652IL_9DFE_076:IL_397D_001 = 0.7424IL_4V9F_070:IL_7A0S_071 = 0.2078IL_4V9F_070:IL_4WF9_076 = 0.2155IL_4V9F_070:IL_5J7L_318 = 0.1745IL_4V9F_070:IL_9DFE_076 = 0.1719IL_4V9F_070:IL_4V9F_070 = 0IL_4V9F_070:IL_8CRE_094 = 0.181IL_4V9F_070:IL_8P9A_317 = 0.1841IL_4V9F_070:IL_8CRE_431 = 0.6425IL_4V9F_070:IL_397D_001 = 0.6688IL_8CRE_094:IL_7A0S_071 = 0.249IL_8CRE_094:IL_4WF9_076 = 0.2884IL_8CRE_094:IL_5J7L_318 = 0.2626IL_8CRE_094:IL_9DFE_076 = 0.2379IL_8CRE_094:IL_4V9F_070 = 0.181IL_8CRE_094:IL_8CRE_094 = 0IL_8CRE_094:IL_8P9A_317 = 0.043IL_8CRE_094:IL_8CRE_431 = 0.5844IL_8CRE_094:IL_397D_001 = 0.5925IL_8P9A_317:IL_7A0S_071 = 0.2626IL_8P9A_317:IL_4WF9_076 = 0.2909IL_8P9A_317:IL_5J7L_318 = 0.2694IL_8P9A_317:IL_9DFE_076 = 0.2445IL_8P9A_317:IL_4V9F_070 = 0.1841IL_8P9A_317:IL_8CRE_094 = 0.043IL_8P9A_317:IL_8P9A_317 = 0IL_8P9A_317:IL_8CRE_431 = 0.5763IL_8P9A_317:IL_397D_001 = 0.5908IL_8CRE_431:IL_7A0S_071 = 0.7116IL_8CRE_431:IL_4WF9_076 = 0.7597IL_8CRE_431:IL_5J7L_318 = 0.6887IL_8CRE_431:IL_9DFE_076 = 0.6652IL_8CRE_431:IL_4V9F_070 = 0.6425IL_8CRE_431:IL_8CRE_094 = 0.5844IL_8CRE_431:IL_8P9A_317 = 0.5763IL_8CRE_431:IL_8CRE_431 = 0IL_8CRE_431:IL_397D_001 = 0.6682IL_397D_001:IL_7A0S_071 = 0.7404IL_397D_001:IL_4WF9_076 = 0.769IL_397D_001:IL_5J7L_318 = 0.7536IL_397D_001:IL_9DFE_076 = 0.7424IL_397D_001:IL_4V9F_070 = 0.6688IL_397D_001:IL_8CRE_094 = 0.5925IL_397D_001:IL_8P9A_317 = 0.5908IL_397D_001:IL_8CRE_431 = 0.6682IL_397D_001:IL_397D_001 = 0IL_7A0S_071IL_4WF9_076IL_5J7L_318IL_9DFE_076IL_4V9F_070IL_8CRE_094IL_8P9A_317IL_8CRE_431IL_397D_001Discrepancy0.000.200.400.60
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