Motif IL_22946.1 Version IL_22946.1 of this group appears in releases 3.12 to 3.19

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-5	2-3	4-5
1	IL_4V9F_083	4V9F	0.3752	0	Major groove platform	0	LSU rRNA	U	2528	G	2529	*	U	2492	C	2493	G	2494	cWW	cWW	cHH
2	IL_4V9F_086	4V9F	0.0000	0	Major groove platform	0	LSU rRNA	C	2542	G	2543	*	U	2615	G	2616	G	2617	cWW	cWW	nchH
3	IL_4Y4O_271	4Y4O	0.0971	0	Major groove platform (H)	2A	LSU rRNA	C	2507	G	2508	*	U	2580	G	2581	G	2582	cWW	cWW	chH
4	IL_4WF9_094	4WF9	0.1069	0	Major groove platform	X	LSU rRNA	C	2534	G	2535	*	U	2607	G	2608	G	2609	cWW	cWW	chH
5	IL_4WF9_106	4WF9	0.5553	0	Major groove intercalation	X	LSU rRNA	G	2858	G	2859	*	U	2898	A	2899	C	2900	cWW	cWW
6	IL_4Y4O_245	4Y4O	0.7151	1	Major groove intercalation (H)	2A	LSU rRNA	U	1841	G	1842	*	U	1898	G	1899	A	1901	cWW	cWW
7	IL_5J7L_355	5J7L	0.7635	0	Major groove intercalation	DB	5S rRNA	C	17	G	18	*	U	65	A	66	G	67	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CG*UGG	3
UG*UCG	1
GG*UAC	1
UG*UGAA	1
CG*UAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*G	3
*A	2
*C	1
*GA	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove platform (3)
Major groove intercalation (2)
Major groove intercalation (H) (1)
Major groove platform (H) (1)
Basepair signature: cWW-cHH-cWW
Heat map statistics: Min 0.10 | Avg 0.48 | Max 0.89

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