Motif IL_22955.1 Version IL_22955.1 of this group appears in releases 3.7 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KXK_001 | 1KXK | 0.5418 | 2 | A | Group II catalytic intron | G | 61 | G | 62 | * | U | 8 | C | 11 | cWW | cWW | |
| 2 | IL_4V8P_189 | 4V8P | 0.0000 | 1 | D1 | LSU rRNA | A | 779 | C | 780 | * | G | 800 | U | 802 | cWW | cWW | |
| 3 | IL_4V9F_045 | 4V9F | 0.2027 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 1269 | U | 1270 | * | A | 1286 | C | 1289 | cWW | cWW |
| 4 | IL_4V8P_271 | 4V8P | 0.6852 | 2 | D1 | LSU rRNA | C | 2869 | U | 2870 | * | A | 2928 | G | 2931 | cWW | cWW | |
| 5 | IL_4WF9_096 | 4WF9 | 0.8755 | 2 | Multiple bulged bases (H) | X | LSU rRNA | C | 2539 | A | 2540 | * | U | 2598 | G | 2601 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*UAUC | 1 |
| AC*GUU | 1 |
| GU*AAUC | 1 |
| CU*AACG | 1 |
| CA*UACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AU | 2 |
| *AC | 2 |
| *U | 1 |
- Annotations
-
- (3)
- Bulged stacked bases (1)
- Multiple bulged bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.20 | Avg 0.55 | Max 0.95
Coloring options: