Motif IL_23638.1 Version IL_23638.1 of this group appears in releases 3.54 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_397D_001 | 397D | 0.4579 | 3 | Multiple bulged bases | B+A | RNA (12-mer) | C | 39 | U | 40 | * | A | 22 | G | 26 | cWW | cWW |
| 2 | IL_7A0S_071 | 7A0S | 0.2087 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1916 | C | 1917 | * | G | 1947 | C | 1950 | cWW | cWW |
| 3 | IL_5TBW_089 | 5TBW | 0.1938 | 2 | Bulged stacked bases | 1 | LSU rRNA | G | 2276 | C | 2277 | * | G | 2307 | U | 2310 | cWW | cWW |
| 4 | IL_5J7L_318 | 5J7L | 0.0595 | 2 | Bulged stacked bases | DA | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 5 | IL_7RQB_076 | 7RQB | 0.0000 | 2 | Bulged stacked bases | 1A | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 6 | IL_1MJI_003 | 1MJI | 0.4520 | 2 | Multiple bulged bases | D | 5S rRNA fragment | C | 30 | C | 31 | * | G | 51 | G | 54 | cWW | cWW |
| 7 | IL_6JQ5_002 | 6JQ5 | 0.7880 | 2 | Multiple bulged bases | A | Hatchet ribozyme | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 8 | IL_6JQ5_005 | 6JQ5 | 0.7952 | 2 | Multiple bulged bases | B | Hatchet ribozyme | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 9 | IL_6JQ6_005 | 6JQ6 | 0.8005 | 2 | Multiple bulged bases | U | Hatchet ribozyme | U | 58 | A | 60 | * | U | 34 | A | 36 | cWW | cWW |
| 10 | IL_6JQ6_002 | 6JQ6 | 0.8005 | 2 | Multiple bulged bases | U | Hatchet ribozyme | U | 58||||11_555 | A | 60||||11_555 | * | U | 34||||11_555 | A | 36||||11_555 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUA*UUA | 4 |
| GC*GCAC | 3 |
| CU*AUCUG | 1 |
| GC*GCAU | 1 |
| CC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CA | 4 |
| U*U | 4 |
| *UCU | 1 |
| *AA | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (6)
- Bulged stacked bases (4)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.51 | Max 0.95
Coloring options: