RNA 3D Hub //

Motif IL_23638.1 Version IL_23638.1 of this group appears in releases 3.54 to 3.61

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 41-42-3
1 IL_397D_001397D0.45793Multiple bulged basesB+ARNA (12-mer)C39U40*A22G26cWWcWW
2 IL_7A0S_0717A0S0.20872Bulged stacked basesX LSU rRNAG1916C1917*G1947C1950cWWcWW
3 IL_5TBW_0895TBW0.19382Bulged stacked bases1 LSU rRNAG2276C2277*G2307U2310cWWcWW
4 IL_5J7L_3185J7L0.05952Bulged stacked basesDA LSU rRNAG1933C1934*G1964C1967cWWcWW
5 IL_7RQB_0767RQB0.00002Bulged stacked bases1A LSU rRNAG1933C1934*G1964C1967cWWcWW
6 IL_1MJI_0031MJI0.45202Multiple bulged basesD5S rRNA fragmentC30C31*G51G54cWWcWW
7 IL_6JQ5_0026JQ50.78802Multiple bulged basesAHatchet ribozymeU58A60*U34A36cWWcWW
8 IL_6JQ5_0056JQ50.79522Multiple bulged basesBHatchet ribozymeU58A60*U34A36cWWcWW
9 IL_6JQ6_0056JQ60.80052Multiple bulged basesUHatchet ribozymeU58A60*U34A36cWWcWW
10 IL_6JQ6_0026JQ60.80052Multiple bulged basesUHatchet ribozymeU58||||11_555A60||||11_555*U34||||11_555A36||||11_555cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUA*UUA4
GC*GCAC3
CU*AUCUG1
GC*GCAU1
CC*GAAG1
Non-Watson-Crick part of the motif
SequenceCounts
*CA4
U*U4
*UCU1
*AA1

Release history

Release3.543.553.563.573.583.593.603.61
Date2022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-17
StatusNew id, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Multiple bulged bases (6)
  • Bulged stacked bases (4)
    • Basepair signature
    cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.51 | Max 0.95
    Help

    Coloring options:

    IL_397D_001:IL_397D_001 = 0IL_397D_001:IL_7A0S_071 = 0.3113IL_397D_001:IL_5TBW_089 = 0.4663IL_397D_001:IL_5J7L_318 = 0.4515IL_397D_001:IL_7RQB_076 = 0.4579IL_397D_001:IL_1MJI_003 = 0.6732IL_397D_001:IL_6JQ5_002 = 0.9325IL_397D_001:IL_6JQ5_005 = 0.9512IL_397D_001:IL_6JQ6_005 = 0.9528IL_397D_001:IL_6JQ6_002 = 0.9528IL_7A0S_071:IL_397D_001 = 0.3113IL_7A0S_071:IL_7A0S_071 = 0IL_7A0S_071:IL_5TBW_089 = 0.2575IL_7A0S_071:IL_5J7L_318 = 0.2036IL_7A0S_071:IL_7RQB_076 = 0.2087IL_7A0S_071:IL_1MJI_003 = 0.4868IL_7A0S_071:IL_6JQ5_002 = 0.8014IL_7A0S_071:IL_6JQ5_005 = 0.8159IL_7A0S_071:IL_6JQ6_005 = 0.8202IL_7A0S_071:IL_6JQ6_002 = 0.8202IL_5TBW_089:IL_397D_001 = 0.4663IL_5TBW_089:IL_7A0S_071 = 0.2575IL_5TBW_089:IL_5TBW_089 = 0IL_5TBW_089:IL_5J7L_318 = 0.1647IL_5TBW_089:IL_7RQB_076 = 0.1938IL_5TBW_089:IL_1MJI_003 = 0.5952IL_5TBW_089:IL_6JQ5_002 = 0.85IL_5TBW_089:IL_6JQ5_005 = 0.8605IL_5TBW_089:IL_6JQ6_005 = 0.8669IL_5TBW_089:IL_6JQ6_002 = 0.8669IL_5J7L_318:IL_397D_001 = 0.4515IL_5J7L_318:IL_7A0S_071 = 0.2036IL_5J7L_318:IL_5TBW_089 = 0.1647IL_5J7L_318:IL_5J7L_318 = 0IL_5J7L_318:IL_7RQB_076 = 0.0595IL_5J7L_318:IL_1MJI_003 = 0.478IL_5J7L_318:IL_6JQ5_002 = 0.8173IL_5J7L_318:IL_6JQ5_005 = 0.8251IL_5J7L_318:IL_6JQ6_005 = 0.8304IL_5J7L_318:IL_6JQ6_002 = 0.8304IL_7RQB_076:IL_397D_001 = 0.4579IL_7RQB_076:IL_7A0S_071 = 0.2087IL_7RQB_076:IL_5TBW_089 = 0.1938IL_7RQB_076:IL_5J7L_318 = 0.0595IL_7RQB_076:IL_7RQB_076 = 0IL_7RQB_076:IL_1MJI_003 = 0.452IL_7RQB_076:IL_6JQ5_002 = 0.788IL_7RQB_076:IL_6JQ5_005 = 0.7952IL_7RQB_076:IL_6JQ6_005 = 0.8005IL_7RQB_076:IL_6JQ6_002 = 0.8005IL_1MJI_003:IL_397D_001 = 0.6732IL_1MJI_003:IL_7A0S_071 = 0.4868IL_1MJI_003:IL_5TBW_089 = 0.5952IL_1MJI_003:IL_5J7L_318 = 0.478IL_1MJI_003:IL_7RQB_076 = 0.452IL_1MJI_003:IL_1MJI_003 = 0IL_1MJI_003:IL_6JQ5_002 = 0.6744IL_1MJI_003:IL_6JQ5_005 = 0.6819IL_1MJI_003:IL_6JQ6_005 = 0.6914IL_1MJI_003:IL_6JQ6_002 = 0.6914IL_6JQ5_002:IL_397D_001 = 0.9325IL_6JQ5_002:IL_7A0S_071 = 0.8014IL_6JQ5_002:IL_5TBW_089 = 0.85IL_6JQ5_002:IL_5J7L_318 = 0.8173IL_6JQ5_002:IL_7RQB_076 = 0.788IL_6JQ5_002:IL_1MJI_003 = 0.6744IL_6JQ5_002:IL_6JQ5_002 = 0IL_6JQ5_002:IL_6JQ5_005 = 0.0558IL_6JQ5_002:IL_6JQ6_005 = 0.0792IL_6JQ5_002:IL_6JQ6_002 = 0.0792IL_6JQ5_005:IL_397D_001 = 0.9512IL_6JQ5_005:IL_7A0S_071 = 0.8159IL_6JQ5_005:IL_5TBW_089 = 0.8605IL_6JQ5_005:IL_5J7L_318 = 0.8251IL_6JQ5_005:IL_7RQB_076 = 0.7952IL_6JQ5_005:IL_1MJI_003 = 0.6819IL_6JQ5_005:IL_6JQ5_002 = 0.0558IL_6JQ5_005:IL_6JQ5_005 = 0IL_6JQ5_005:IL_6JQ6_005 = 0.0796IL_6JQ5_005:IL_6JQ6_002 = 0.0796IL_6JQ6_005:IL_397D_001 = 0.9528IL_6JQ6_005:IL_7A0S_071 = 0.8202IL_6JQ6_005:IL_5TBW_089 = 0.8669IL_6JQ6_005:IL_5J7L_318 = 0.8304IL_6JQ6_005:IL_7RQB_076 = 0.8005IL_6JQ6_005:IL_1MJI_003 = 0.6914IL_6JQ6_005:IL_6JQ5_002 = 0.0792IL_6JQ6_005:IL_6JQ5_005 = 0.0796IL_6JQ6_005:IL_6JQ6_005 = 0IL_6JQ6_005:IL_6JQ6_002 = 0IL_6JQ6_002:IL_397D_001 = 0.9528IL_6JQ6_002:IL_7A0S_071 = 0.8202IL_6JQ6_002:IL_5TBW_089 = 0.8669IL_6JQ6_002:IL_5J7L_318 = 0.8304IL_6JQ6_002:IL_7RQB_076 = 0.8005IL_6JQ6_002:IL_1MJI_003 = 0.6914IL_6JQ6_002:IL_6JQ5_002 = 0.0792IL_6JQ6_002:IL_6JQ5_005 = 0.0796IL_6JQ6_002:IL_6JQ6_005 = 0IL_6JQ6_002:IL_6JQ6_002 = 0IL_397D_001IL_7A0S_071IL_5TBW_089IL_5J7L_318IL_7RQB_076IL_1MJI_003IL_6JQ5_002IL_6JQ5_005IL_6JQ6_005IL_6JQ6_002Discrepancy0.000.200.400.600.80
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