Motif IL_23638.1 Version IL_23638.1 of this group appears in releases 3.54 to 3.61

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_397D_001	397D	0.4579	3	Multiple bulged bases	B+A	RNA (12-mer)	C	39	U	40	*	A	22	G	26	cWW	cWW
2	IL_7A0S_071	7A0S	0.2087	2	Bulged stacked bases	X	LSU rRNA	G	1916	C	1917	*	G	1947	C	1950	cWW	cWW
3	IL_5TBW_089	5TBW	0.1938	2	Bulged stacked bases	1	LSU rRNA	G	2276	C	2277	*	G	2307	U	2310	cWW	cWW
4	IL_5J7L_318	5J7L	0.0595	2	Bulged stacked bases	DA	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
5	IL_7RQB_076	7RQB	0.0000	2	Bulged stacked bases	1A	LSU rRNA	G	1933	C	1934	*	G	1964	C	1967	cWW	cWW
6	IL_1MJI_003	1MJI	0.4520	2	Multiple bulged bases	D	5S rRNA fragment	C	30	C	31	*	G	51	G	54	cWW	cWW
7	IL_6JQ5_002	6JQ5	0.7880	2	Multiple bulged bases	A	Hatchet ribozyme	U	58	A	60	*	U	34	A	36	cWW	cWW
8	IL_6JQ5_005	6JQ5	0.7952	2	Multiple bulged bases	B	Hatchet ribozyme	U	58	A	60	*	U	34	A	36	cWW	cWW
9	IL_6JQ6_005	6JQ6	0.8005	2	Multiple bulged bases	U	Hatchet ribozyme	U	58	A	60	*	U	34	A	36	cWW	cWW
10	IL_6JQ6_002	6JQ6	0.8005	2	Multiple bulged bases	U	Hatchet ribozyme	U	58\|\|\|\|11_555	A	60\|\|\|\|11_555	*	U	34\|\|\|\|11_555	A	36\|\|\|\|11_555	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UUA*UUA	4
GC*GCAC	3
CU*AUCUG	1
GC*GCAU	1
CC*GAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
*CA	4
U*U	4
*UCU	1
*AA	1

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Multiple bulged bases (6)
Bulged stacked bases (4)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.51 | Max 0.95

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