Motif IL_23663.1 Version IL_23663.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 3-4 | 6-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3E5C_001 | 3E5C | 0.0000 | 2 | Isolated non-canonical cWW pair | A | SAM-III riboswitch aptamer (SMK box) | G | 12 | A | 13 | U | 14 | * | A | 27 | G | 28 | G | 31 | C | 32 | cWW | cWW | cWW | |
| 2 | IL_4V9F_072 | 4V9F | 0.7339 | 0 | 0 | LSU rRNA | U | 2652 | A | 2653 | C | 2654 | * | G | 2090 | G | 2091 | G | 2092 | G | 2093 | cWW | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAU*AGAUGC | 1 |
| UAC*GGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAUG | 1 |
| A*GG | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (1)
- (1)
- Basepair signature
- cWW-cSH-cWW-cWW
- Heat map statistics
- Min 0.73 | Avg 0.37 | Max 0.73
Coloring options: