Motif IL_23663.2 Version IL_23663.2 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 3-4 | 6-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3E5C_001 | 3E5C | 0.7339 | 2 | Isolated non-canonical cWW pair | A | SMK box (SAM-III) Riboswitch | G | 12 | A | 13 | U | 14 | * | A | 27 | G | 28 | G | 31 | C | 32 | cWW | cWW | cWW | |
| 2 | IL_4V9F_072 | 4V9F | 0.0000 | 0 | 0 | LSU rRNA | U | 2652 | A | 2653 | C | 2654 | * | G | 2090 | G | 2091 | G | 2092 | G | 2093 | cWW | cWW | cWW | cSH | |
| 3 | IL_6DME_003 | 6DME | 0.2753 | 0 | A | ppGpp Riboswitch | C | 20 | A | 21 | C | 22 | * | G | 33 | A | 34 | A | 35 | G | 36 | cWW | cWw | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAU*AGAUGC | 1 |
| UAC*GGGG | 1 |
| CAC*GAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GAUG | 1 |
| A*GG | 1 |
| A*AA | 1 |
- Annotations
-
- (2)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cSH-cWW-cWW
- Heat map statistics
- Min 0.28 | Avg 0.39 | Max 0.76
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