Motif IL_23663.3 Version IL_23663.3 of this group appears in releases 3.18 to 3.26
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 3-4 | 6-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_061 | 4IOA | 0.3715 | 1 | X | LSU rRNA | U | 1515 | A | 1516 | C | 1517 | * | G | 1503 | G | 1504 | U | 1505 | A | 1507 | cWW | cWW | cWW | ncWH |
| 2 | IL_6DME_003 | 6DME | 0.0000 | 0 | A | ppGpp Riboswitch | C | 20 | A | 21 | C | 22 | * | G | 33 | A | 34 | A | 35 | G | 36 | cWW | cWw | cWW | cSH |
| 3 | IL_4V9F_072 | 4V9F | 0.2753 | 0 | 0 | LSU rRNA | U | 2652 | A | 2653 | C | 2654 | * | G | 2090 | G | 2091 | G | 2092 | G | 2093 | cWW | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAC*GGUCA | 1 |
| CAC*GAAG | 1 |
| UAC*GGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GUC | 1 |
| A*AA | 1 |
| A*GG | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cSH-cWW-cWW
- Heat map statistics
- Min 0.28 | Avg 0.23 | Max 0.39
Coloring options: