Motif IL_23751.1 Version IL_23751.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_384 | 8P9A | 0.1743 | 0 | Isolated non-canonical cWW contact (H) | sR | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 2 | IL_8P9A_408 | 8P9A | 0.1477 | 0 | Isolated non-canonical cWW pair (H) | sR | SSU rRNA | C | 686 | G | 687 | G | 688 | * | C | 646 | G | 647 | G | 648 | cWW | cWW | |
| 3 | IL_1SI2_002 | 1SI2 | 0.0000 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 4 | IL_1SI3_001 | 1SI3 | 0.0849 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 5 | IL_4AOB_005 | 4AOB | 0.2475 | 0 | Isolated non-canonical cWW pair | A | SAM-I riboswitch | C | 78 | G | 79 | U | 80 | * | G | 71 | A | 72 | G | 73 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGA*UGA | 2 |
| UGU*AGA | 1 |
| CGG*CGG | 1 |
| CGU*GAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 4 |
| G*A | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW contact (2)
- Isolated non-canonical cWW pair (1)
- Isolated non-canonical cWW contact (H) (1)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.16 | Max 0.30
Coloring options: