Motif IL_24905.5 Version IL_24905.5 of this group appears in releases 3.27 to 3.36
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_061 | 4IOA | 0.9521 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | * | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | cWW | |
| 2 | IL_2O3V_003 | 2O3V | 0.0000 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | ||
| 3 | IL_3MEI_004 | 3MEI | 0.1428 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUCA*UAC | 1 |
| CGCU*AAAAG | 1 |
| CGCC*GCCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUC*A | 1 |
| GC*AAA | 1 |
| GC*CCU | 1 |
Release history
| Release | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.46 | Max 0.96
Coloring options: