Motif IL_24905.7 Version IL_24905.7 of this group appears in releases 3.46 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_061 | 4IOA | 0.9521 | 1 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | * | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | cWW | |
| 2 | IL_2O3V_003 | 2O3V | 0.0000 | 2 | B+A | RNA (23-mer) | C | 30 | G | 31 | C | 32 | U | 33 | * | A | 15 | A | 17 | G | 19 | cWW | cWS | cWW | ||
| 3 | IL_3MEI_004 | 3MEI | 0.1428 | 2 | B+A | RNA (23-mer) | C | 7 | G | 8 | C | 9 | C | 10 | * | G | 13 | C | 15 | G | 17 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUCA*UAC | 1 |
| CGCU*AAAAG | 1 |
| CGCC*GCCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUC*A | 1 |
| GC*AAA | 1 |
| GC*CCU | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWS-cWW
- Heat map statistics
- Min 0.14 | Avg 0.46 | Max 0.96
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