Motif IL_25167.1 Version IL_25167.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 3-4 | 5-9 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V5O_152 | 4V5O | 0.0000 | 0 | BA | SSU rRNA | C | 1359 | U | 1360 | A | 1361 | * | U | 1378 | G | 1379 | G | 1380 | A | 1381 | A | 1382 | G | 1383 | cWW | cWW | tWH | |
| 2 | IL_4V88_458 | 4V88 | 0.2798 | 0 | Major groove platform; stack outside cWW | A6 | SSU rRNA | C | 1389 | U | 1390 | A | 1391 | * | U | 1407 | G | 1408 | G | 1409 | A | 1410 | A | 1411 | G | 1412 | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUA*UGGAAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*GGAA | 2 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Major groove platform; stack outside cWW (1)
- Basepair signature
- cWW-L-tWH-R-R-R-cWW
- Heat map statistics
- Min 0.28 | Avg 0.14 | Max 0.28
Coloring options: