Motif IL_25186.3 Version IL_25186.3 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 3-8 | 4-7 | 4-8 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_116 | 4WF9 | 0.3714 | 1 | X | LSU rRNA | C | 1511 | U | 1512 | A | 1513 | A | 1514 | G | 1515 | * | U | 1565 | G | 1566 | A | 1567 | U | 1568 | G | 1570 | cWW | ntHS | ncWS | ncWWa | |
| 2 | IL_3BNN_006 | 3BNN | 0.1805 | 1 | C+D | A site of human ribosome | C | 5 | A | 6 | C | 7 | C | 8 | C | 9 | * | G | 12 | A | 13 | C | 14 | A | 15 | G | 17 | cWW | ncBW | cWWa | cWW | |
| 3 | IL_7Q80_002 | 7Q80 | 0.0000 | 1 | B+C | RNA 2 + RNA 3 | G | 14 | A | 15 | C | 16 | C | 17 | C | 18 | * | G | 30 | A | 31 | C | 32 | A | 33 | C | 35 | cWW | cWW | |||
| 4 | IL_3BNN_007 | 3BNN | 0.1768 | 1 | D+C | A site of human ribosome | C | 5 | A | 6 | C | 7 | C | 8 | C | 9 | * | G | 12 | A | 13 | C | 14 | A | 15 | G | 17 | cWW | ncWWa | cWW | ||
| 5 | IL_7Q80_004 | 7Q80 | 0.2012 | 1 | E+F | RNA 2 + RNA 3 | G | 14 | A | 15 | C | 16 | C | 17 | C | 18 | * | G | 30 | A | 31 | C | 32 | A | 33 | C | 35 | cWW | ncBW | ncWWa | cWW | |
| 6 | IL_7V9E_002 | 7V9E | 0.1886 | 1 | A | RNA (68-MER) | G | 12 | A | 13 | C | 14 | C | 15 | C | 16 | * | G | 33 | A | 34 | C | 35 | A | 36 | C | 38 | cWW | ncWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACCC*GACAAC | 3 |
| CACCC*GACAAG | 2 |
| CUAAG*UGAUGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACC*ACAA | 5 |
| UAA*GAUG | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.18 | Avg 0.23 | Max 0.47
Coloring options: