Motif IL_25652.1 Version IL_25652.1 of this group appears in releases 4.2 to 4.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9W2K_001 | 9W2K | 0.2977 | 2 | I+F | DNA/RNA (5'-R(P*AP*CP*CP*GP*AP*CP*CP*A)-D(P*U)-R(P*AP*GP*CP*U)-3') | C | 12 | A | 15 | G | 16 | * | C | 8 | G | 9 | cWW | tSs | cWW |
| 2 | IL_8S95_001 | 8S95 | 0.0000 | 1 | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 78 | A | 80 | G | 81 | * | C | 108 | G | 109 | cWW | ntSs | cWW |
| 3 | IL_9D9P_002 | 9D9P | 0.2048 | 1 | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 48 | A | 50 | G | 51 | * | C | 78 | G | 79 | cWW | ntSs | cWW |
| 4 | IL_9D9O_001 | 9D9O | 0.4358 | 1 | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 48 | A | 50 | G | 51 | * | C | 78 | G | 79 | ncWW | tSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAG*CG | 3 |
| CA(DU)AG*CG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 3 |
| A(DU)A* | 1 |
Release history
| Release | 4.2 |
|---|---|
| Date | 2025-10-08 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSS-cWW
- Heat map statistics
- Min 0.20 | Avg 0.30 | Max 0.68
Coloring options: