Motif IL_25873.1 Version IL_25873.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-3 | 2-8 | 3-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9DFE_108 | 9DFE | 0.7870 | 0 | 1A | LSU rRNA | C | 2870 | C | 2871 | G | 2872 | A | 2873 | C | 2874 | * | G | 2843 | G | 2844 | G | 2845 | G | 2846 | cWW | cSW | cWW | |||
| 2 | IL_8CRE_467 | 8CRE | 0.0492 | 0 | CM | SSU rRNA | G | 1747 | U | 1748 | A | 1749 | A | 1750 | C | 1751 | * | G | 1625 | C | 1626 | C | 1627 | C | 1628 | cWW | cSH | ncWS | cWW | cWW | |
| 3 | IL_8GLP_275 | 8GLP | 0.0000 | 0 | S2 | SSU rRNA | G | 1829 | U | 1830 | A | 1831 | 6MZ | 1832 | C | 1833 | * | G | 1702 | OMC | 1703 | C | 1704 | C | 1705 | cWW | cSH | cWS | cWW | cWW | |
| 4 | IL_8P9A_453 | 8P9A | 0.0507 | 0 | sR | SSU rRNA | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | * | G | 1638 | C | 1639 | C | 1640 | C | 1641 | cWW | cSH | cWS | cWW | cWW | |
| 5 | IL_8B0X_058 | 8B0X | 0.0618 | 0 | A | SSU rRNA | G | 1497 | UR3 | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | 4OC | 1402 | C | 1403 | C | 1404 | cWW | cSH | cWS | cWW | cWW | |
| 6 | IL_4LFB_068 | 4LFB | 0.0859 | 0 | A | SSU rRNA | G | 1497 | UR3 | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | 4OC | 1402 | C | 1403 | 5MC | 1404 | cWW | cSH | cWS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAAC*GCCC | 2 |
| CCGAC*GGGG | 1 |
| GUA(6MZ)C*G(OMC)CC | 1 |
| G(UR3)AAC*G(4OC)CC | 1 |
| G(UR3)AAC*G(4OC)C(5MC) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*CC | 2 |
| (UR3)AA*(4OC)C | 2 |
| CGA*GG | 1 |
| UA(6MZ)*(OMC)C | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.26 | Max 0.79
Coloring options: