Motif IL_25960.1 Version IL_25960.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 6-9 | 7-8 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5XTM_006 | 5XTM | 0.0000 | 1 | D | RNA (47-MER) | G | 8 | A | 9 | U | 10 | G | 11 | A | 12 | A | 13 | A | 14 | * | U | 35 | A | 36 | C | 38 | C | 39 | cWW | ncWWa | cWw | cWW |
| 2 | IL_8C3A_433 | 8C3A | 0.9247 | 0 | CM | SSU rRNA | A | 738 | A | 739 | A | 740 | A | 741 | A | 742 | U | 743 | U | 744 | * | A | 775 | U | 776 | A | 777 | U | 778 | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUGAAA*UAACC | 1 |
| AAAAAUU*AUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGAA*AAC | 1 |
| AAAAU*UA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
Coloring options: