Motif IL_26900.4 Version IL_26900.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-6 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9H3G_179 | 9H3G | 0.0644 | 0 | h1 | SSU rRNA | C | 445 | C | 446 | A | 447 | A | 448 | PSU | 449 | * | A | 462 | G | 463 | cSH | cWW | tWH | cWS | cWW | |
| 2 | IL_9PN5_165 | 9PN5 | 0.0000 | 0 | B5 | SSU rRNA | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | * | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW | |
| 3 | IL_9SUM_161 | 9SUM | 0.0408 | 0 | CA | SSU rRNA | C | 432 | C | 433 | A | 434 | A | 435 | U | 436 | * | A | 449 | G | 450 | cSH | cWW | tWH | cWS | cWW | |
| 4 | IL_8CRE_414 | 8CRE | 0.0618 | 0 | C-loop | CM | SSU rRNA | C | 441 | C | 442 | A | 443 | A | 444 | U | 445 | * | A | 458 | G | 459 | cSH | cWW | tWH | cWS | cWW |
| 5 | IL_8GLP_327 | 8GLP | 0.0697 | 0 | C-loop (H) | S2 | SSU rRNA | C | 491 | C | 492 | A | 493 | C | 494 | U | 495 | * | A | 508 | OMG | 509 | cSH | cWW | tWH | cWW | |
| 6 | IL_8B0X_017 | 8B0X | 0.0881 | 0 | A | SSU rRNA | A | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | U | 390 | cSH | cWW | tWH | cWS | cWW | |
| 7 | IL_4LFB_015 | 4LFB | 0.1569 | 0 | C-loop | A | SSU rRNA | G | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | C | 390 | cWW | ntWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAU*AG | 3 |
| CCAA(PSU)*AG | 1 |
| CCACU*A(OMG) | 1 |
| ACAAU*AU | 1 |
| GCAAU*AC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA* | 6 |
| CAC* | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- C-loop (2)
- C-loop (H) (1)
- Basepair signature
- cWW-cSH-cWS-tWH-cWW
- Heat map statistics
- Min 0.04 | Avg 0.09 | Max 0.18
Coloring options: