Motif IL_27134.1 Version IL_27134.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_312 | 8GLP | 0.4781 | 0 | Isolated non-canonical cWW pair (H) | L5 | LSU rRNA | G | 4401 | C | 4402 | PSU | 4403 | * | G | 4440 | A | 4441 | PSU | 4442 | cWW | cWWa | cWW |
| 2 | IL_8GLP_332 | 8GLP | 0.3433 | 0 | Isolated non-canonical cWW pair (H) | S2 | SSU rRNA | C | 1230 | C | 1231 | PSU | 1232 | * | G | 1526 | C | 1527 | G | 1528 | cWW | ncWB | cWW |
| 3 | IL_8GLP_297 | 8GLP | 0.0000 | 0 | Isolated non-canonical cWW pair (H) | L5 | LSU rRNA | A | 1858 | C | 1859 | PSU | 1860 | * | A | 1874 | C | 1875 | U | 1876 | cWW | ncBW | cWW |
| 4 | IL_8GLP_320 | 8GLP | 0.2352 | 0 | S2 | SSU rRNA | PSU | 649 | A | 650 | PSU | 651 | * | G | 23 | C | 24 | A | 25 | cWW | cWW | cWW | |
| 5 | IL_8GLP_295 | 8GLP | 0.3341 | 0 | Isolated non-canonical cWW pair (H) | L5 | LSU rRNA | PSU | 1779 | A | 1780 | PSU | 1781 | * | A | 1749 | G | 1750 | A | 1751 | cWW | cWW | cWW |
| 6 | IL_5UNE_006 | 5UNE | 0.3435 | 0 | Isolated non-canonical cWW pair | B+A | RNA (47-MER) | U | 16 | A | 17 | G | 18 | * | C | 27 | A | 28 | G | 29 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC(PSU)*GA(PSU) | 1 |
| CC(PSU)*GCG | 1 |
| AC(PSU)*ACU | 1 |
| (PSU)A(PSU)*GCA | 1 |
| (PSU)A(PSU)*AGA | 1 |
| UAG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*C | 2 |
| C*A | 1 |
| A*C | 1 |
| A*G | 1 |
| A*A | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (H) (4)
- Isolated non-canonical cWW pair (1)
- (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.21 | Avg 0.33 | Max 0.61
Coloring options: