Motif IL_27393.3 Version IL_27393.3 of this group appears in releases 3.7 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 1-10 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5CNR_001 | 5CNR | 0.1971 | 0 | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | * | G | 40 | G | 41 | cWW | cWW |
| 2 | IL_4PHY_001 | 4PHY | 0.0000 | 0 | A+B | RNA (26-MER) + RNA (20-mer) | C | 5 | U | 6 | C | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | * | G | 40 | G | 41 | cWW | cWW |
| 3 | IL_4P97_001 | 4P97 | 0.9671 | 0 | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | C | 9 | C | 10 | A | 11 | C | 12 | * | G | 40 | G | 41 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUACCCAC*GG | 2 |
| CUCCCCAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UACCCA* | 2 |
| UCCCCA* | 1 |
Release history
| Release | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.20 | Avg 0.48 | Max 1.00
Coloring options: