Motif IL_27844.2 Version IL_27844.2 of this group appears in releases 3.86 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_476 | 4V88 | 0.7718 | 0 | Other IL | A6 | SSU rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW | |
| 2 | IL_2ET8_003 | 2ET8 | 0.5922 | 1 | Decoding loop related | A+B | RNA (22-mer) | G | 15 | A | 17 | G | 18 | * | C | 29 | A | 30 | C | 31 | cWW | cWW | |
| 3 | IL_3LOA_003 | 3LOA | 0.4592 | 1 | Decoding loop with one bulged A | B+A | RNA (23-mer) | G | 1491 | A | 1493 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW | |
| 4 | IL_8C3A_454 | 8C3A | 0.6684 | 0 | Other IL | CM | SSU rRNA | A | 1219 | C | 1220 | A | 1221 | * | U | 1234 | U | 1235 | U | 1236 | cWW | cWW | |
| 5 | IL_4V88_448 | 4V88 | 0.5327 | 0 | A6 | SSU rRNA | A | 1234 | C | 1235 | A | 1236 | * | U | 1249 | U | 1250 | U | 1251 | cWW | cWW | ||
| 6 | IL_6CZR_122 | 6CZR | 0.2670 | 0 | Isolated non-canonical cWW pair | 1a | SSU rRNA | G | 196 | U | 197 | G | 198 | * | C | 181 | C | 182 | C | 183 | cWW | cWW | ncWW |
| 7 | IL_1XJR_003 | 1XJR | 0.0000 | 1 | Isolated non-canonical cWW pair | A | s2m RNA | G | 32 | G | 34 | G | 35 | * | C | 16 | A | 17 | C | 18 | cWW | cWW | cWW |
| 8 | IL_4V88_455 | 4V88 | 0.2457 | 1 | Isolated non-canonical cWW pair | A6 | SSU rRNA | C | 1339 | A | 1341 | C | 1342 | * | G | 1383 | A | 1384 | G | 1385 | cWW | ncwW | cWW |
| 9 | IL_8C3A_463 | 8C3A | 0.3990 | 3 | CM | SSU rRNA | A | 1355 | G | 1358 | C | 1360 | * | G | 1336 | C | 1337 | U | 1338 | ncWW | cWW | ||
| 10 | IL_4M4O_004 | 4M4O | 0.5318 | 0 | B | RNA (59-MER) | C | 39 | A | 40 | C | 41 | * | G | 26 | A | 27 | G | 28 | cWW | cWW | ||
| 11 | IL_4M6D_013 | 4M6D | 0.5538 | 0 | H | aptamer | C | 39 | A | 40 | C | 41 | * | G | 26 | A | 27 | G | 28 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAG*CAC | 2 |
| ACA*UUU | 2 |
| CAC*GAG | 2 |
| CAG*UAG | 1 |
| GUG*CCC | 1 |
| GAGG*CAC | 1 |
| CUAC*GAG | 1 |
| AUAGUC*GCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 3 |
| AA*A | 2 |
| C*U | 2 |
| U*C | 1 |
| AG*A | 1 |
| UA*A | 1 |
| UAGU*C | 1 |
- Annotations
-
- (4)
- Isolated non-canonical cWW pair (3)
- Other IL (2)
- Decoding loop related (1)
- Decoding loop with one bulged A (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.50 | Max 0.77
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